| Short Name: | image |
|---|---|
| Version: |
Image
NDAR neuroimaging definitions
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| ElementName | DataType | Size | Required | Condition | ElementDescription | ValueRange | Notes |
|---|---|---|---|---|---|---|---|
| subjectkey | GUID | Required | The NDAR Global Unique Identifier (GUID) for subjects which identifies a subject in NDAR | NDAR* | |||
| src_subject_id | String | 20 | Required | The site or study's subject identification | |||
| interview_date | Date | Required | Date on which the interview/genetic test/sampling/imaging was completed | Required field | |||
| interview_age | Integer | Required | Age in months at the time of the interview/test/sampling/imaging. | 0 :: 1200 | Age is rounded to chronological month If the research participant is 15 days old at time of interview the appropriate value would be 0 months if the participant is 16 days old the value would be 1 month | ||
| gender | String | 50 | Required | Gender | M; F | ||
| comments_misc | String | 255 | Optional | Miscellaneous comments on study, interview, methodology relevant to this form data | |||
| image_file | File | Required | File name of image | ||||
| image_thumbnail_file | Thumbnail | Recommended | Thumbnail | ||||
| image_description | String | 512 | Required | Image description, i.e. DTI, fMRI, Fast SPGR, phantom, EEG, dynamic PET | |||
| image_file_format | String | 50 | Required | Image file format | AFNI; ANALYZE; AVI; BIORAD; BMP; BRIK; BRUKER; CHESHIRE; COR; DICOM; DM3; FITS; GE GENESIS; GE SIGNA4X; GIF; HEAD; ICO; ICS; INTERFILE; JPEG; LSM; MAGNETOM VISION; MEDIVISION; MGH; MICRO CAT; MINC; MIPAV XML; MRC; NIFTI; NRRD; OSM; PCX; PIC; PICT; PNG; QT; RAW; SPM; STK; TIFF; TGA; TMG; XBM; XPM; PARREC; MINC HDF; LIFF; BFLOAT; SIEMENS TEXT; ZVI; JP2; MATLAB; VISTA; ecat6; ecat7; | ||
| image_modality | String | 20 | Required | Image modality | MRI; PET; CT; SPECT; ultrasound; FA; X-Ray | Computed Radiography; Computed Tomography; External Camera Photography; FA; General Microscopy; MRI; Magnetic Resonance; Magnetic Resonance Spectroscopy; Nuclear Medicine; Single Photon Emission Computed Tomography; Ultrasound | |
| scanner_manufacturer_pd | String | 30 | Conditional | #image_file_format = DICOM && #image_modality = MRI; #image_file_format = NIFTI && #image_modality = MRI; #image_file_format = MINC&& #image_modality = MRI | Scanner Manufacturer | ||
| scanner_type_pd | String | 30 | Conditional | #image_file_format = DICOM && #image_modality = MRI; #image_file_format = NIFTI && #image_modality = MRI; #image_file_format = MINC&& #image_modality = MRI | Scanner Type | ||
| scanner_software_versions_pd | String | 100 | Recommended | Scanner Software Versions | |||
| magnetic_field_strength | String | 50 | Conditional | #image_file_format = DICOM && #image_modality = MRI; #image_file_format = NIFTI && #image_modality = MRI; #image_file_format = MINC&& #image_modality = MRI | Magnetic field strength | ||
| mri_repetition_time_pd | Float | Conditional | #image_file_format = DICOM && #image_modality = MRI; #image_file_format = NIFTI && #image_modality = MRI; #image_file_format = MINC&& #image_modality = MRI | Repetition Time (seconds) | |||
| mri_echo_time_pd | Float | Conditional | #image_file_format = DICOM && #image_modality = MRI; #image_file_format = NIFTI && #image_modality = MRI; #image_file_format = MINC&& #image_modality = MRI | Echo Time (seconds) | |||
| flip_angle | String | 30 | Conditional | #image_file_format = DICOM && #image_modality = MRI; #image_file_format = NIFTI && #image_modality = MRI; #image_file_format = MINC&& #image_modality = MRI | Flip angle | ||
| acquisition_matrix | String | 30 | Conditional | #image_file_format = DICOM && #image_modality = MRI; #image_file_format = NIFTI && #image_modality = MRI; #image_file_format = MINC&& #image_modality = MRI | Acquisition matrix | ||
| mri_field_of_view_pd | String | 50 | Conditional | #image_file_format = DICOM && #image_modality = MRI; #image_file_format = NIFTI && #image_modality = MRI; #image_file_format = MINC&& #image_modality = MRI | Field of View | ||
| patient_position | String | 50 | Conditional | #image_file_format = DICOM && #image_modality = MRI; #image_file_format = NIFTI && #image_modality = MRI; #image_file_format = MINC&& #image_modality = MRI | Patient position | ||
| photomet_interpret | String | 50 | Conditional | #image_file_format = DICOM && #image_modality = MRI; #image_file_format = NIFTI && #image_modality = MRI; #image_file_format = MINC&& #image_modality = MRI | Photometric interpretation | ||
| receive_coil | String | 50 | Recommended | Receive coil name | |||
| transmit_coil | String | 50 | Recommended | Transmit coil name | |||
| transformation_performed | String | 4 | Required | Performed transformation | Yes; No | ||
| transformation_type | String | 50 | Conditional | #transformation_performed=Yes | Type of transformation | ||
| image_history | String | 1024 | Optional | Image history | |||
| image_num_dimensions | Integer | Required | Number of dimensions | 1 :: 5 | |||
| image_extent1 | Integer | Required | Extent [1] X dimension | 1+ | |||
| image_extent2 | Integer | Conditional | #image_num_dimensions > 1 | Extent [2] Y dimension | 1+ | ||
| image_extent3 | Integer | Conditional | #image_num_dimensions > 2 | Extent [3] Z dimension | 1+ | ||
| image_extent4 | Integer | Conditional | #image_num_dimensions > 3 | Extent [4] | |||
| extent4_type | String | 50 | Conditional | #image_num_dimensions > 3 | Description of extent [4] | ||
| image_extent5 | Integer | Conditional | #image_num_dimensions > 4 | Extent [5] | 1+ | ||
| extent5_type | String | 50 | Conditional | #image_num_dimensions > 4 | Description of extent [5] | ||
| image_unit1 | String | 20 | Required | Units [1] X dimension | Inches; Centimeters; Angstroms; Nanometers; Micrometers; Millimeters; Meters; Kilometers; Miles; Nanoseconds; Microseconds; Milliseconds; Seconds; Minutes; Hours; Hertz | ||
| image_unit2 | String | 20 | Conditional | #image_num_dimensions > 1 | Units [2] Y dimension | Inches; Centimeters; Angstroms; Nanometers; Micrometers; Millimeters; Meters; Kilometers; Miles; Nanoseconds; Microseconds; Milliseconds; Seconds; Minutes; Hours; Hertz | |
| image_unit3 | String | 20 | Conditional | #image_num_dimensions > 2 | Units [3] Z dimension | Inches; Centimeters; Angstroms; Nanometers; Micrometers; Millimeters; Meters; Kilometers; Miles; Nanoseconds; Microseconds; Milliseconds; Seconds; Minutes; Hours; Hertz | |
| image_unit4 | String | 20 | Conditional | #image_num_dimensions > 3 | Units [4] | Inches; Centimeters; Angstroms; Nanometers; Micrometers; Millimeters; Meters; Kilometers; Miles; Nanoseconds; Microseconds; Milliseconds; Seconds; Minutes; Hours; Hertz | |
| image_unit5 | String | 20 | Conditional | #image_num_dimensions > 4 | Units [5] | Inches; Centimeters; Angstroms; Nanometers; Micrometers; Millimeters; Meters; Kilometers; Miles; Nanoseconds; Microseconds; Milliseconds; Seconds; Minutes; Hours; Hertz | |
| image_resolution1 | Float | Required | Resolution [1] X dimension | 0+ | |||
| image_resolution2 | Float | Conditional | #image_num_dimensions > 1 | Resolution [2] Y dimension | 0+ | ||
| image_resolution3 | Float | Conditional | #image_num_dimensions > 2 | Resolution [3] Z dimension | 0+ | ||
| image_resolution4 | Float | Conditional | #image_num_dimensions > 3 | Resolution [4] | 0+ | ||
| image_resolution5 | Float | Conditional | #image_num_dimensions > 4 | Resolution [5] | 0+ | ||
| image_slice_thickness | Float | Required | Slice thickness | ||||
| image_orientation | String | 20 | Required | Orientation | Axial; Coronal; Sagittal | ||
| qc_outcome | String | 25 | Recommended | Provide information on the conclusion of the quality control methods regarding the quality of the image | pass; fail; questionable | ||
| qc_description | String | 255 | Recommended | Provide information on the methods used to perform quality control checks on the image | |||
| qc_fail_quest_reason | String | 255 | Recommended | Provide a reason that the image was determined to fail a quality control check or if the quality control check determined that the image was questionable | |||
| decay_correction | String | 10 | Recommended | Decay correction | |||
| frame_end_times | Integer | Recommended | Frame end times | ||||
| frame_end_unit | String | 10 | Recommended | Frame end unit | |||
| frame_start_times | Integer | Recommended | Frame start times | ||||
| frame_start_unit | String | 10 | Recommended | Frame start unit | |||
| pet_isotope | String | 50 | Recommended | PET isotope | |||
| pet_tracer | String | 100 | Recommended | PET tracer | |||
| time_diff_inject_to_image | Integer | Recommended | Time difference injection to image | ||||
| time_diff_units | String | 10 | Recommended | Time difference units |
