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The filters you have selected from various query interfaces will be stored here, in the 'Filter Cart'. The database will be queried using filters added to your 'Filter Cart', when multiple filters are defined, each will be executed using 'AND' logic, so with each filter that is applied the result set gets smaller.

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Description
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Notes
Data Structures with shared data
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Advanced Normalization Tools (ANTs) Cortical Thickness

antsvol

01

Advanced Normalization Tools (ANTs) Cortical Thickness

Download Definition as
Download Submission Template as
Element NameData TypeSizeRequiredDescriptionValue RangeNotes
subjectkeyGUIDRequiredThe NDAR Global Unique Identifier (GUID) for research subjectNDAR*
src_subject_idString20RequiredSubject ID how it's defined in lab/project
img03_idIntegerRequiredCorresponds to row_id in image03 data structure, mapping derivative to source record in image03
interview_dateDateRequiredDate on which the interview/genetic test/sampling/imaging was completed. MM/DD/YYYYRequired field
interview_ageIntegerRequiredAge in months at the time of the interview/test/sampling/imaging.0 :: 1260Age is rounded to chronological month. If the research participant is 15-days-old at time of interview, the appropriate value would be 0 months. If the participant is 16-days-old, the value would be 1 month.
genderString20RequiredSex of the subjectM;FM = Male; F = Female
experiment_idIntegerRequiredID for the Experiment/settings/run
file_sourceString1,024RequiredFile name/location
origin_dataset_idIntegerRequiredOrigin dataset Id
pipelineString100RequiredPipeline name
pipeline_scriptString255RequiredFile from pipeline used to derive output
pipeline_typeString255RequiredDescription of pipeline platform (i.e., LONI, NITRC-CE, NiPype)
pipeline_toolsString255RequiredSpecific tools used in a pipeline (i.e., FreeSurfer, FSL, ANTs)
pipeline_versionString255RequiredVersion assigned to pipeline
atlasString255RequiredAtlas
atlas_versionString255RequiredAtlas version
grey_matter_cortex_thickFloatRequiredGrey matter cortex mean cortical thickness
r_thalamus_proper_thickFloatRequiredright thalamus proper mean cortical thickness mm
r_cer_exterior_thickFloatRequiredright cerebellum exterior mean cortical thickness mm
r_infer_latventr_thickFloatRequiredright inferior lateral ventricle mean cortical thickness mm
r_cer_white_matter_thickFloatRequiredright cerebellum white matter mean cortical thickness mm
r_lat_ventricle_thickFloatRequiredright lateral ventricle mean cortical thickness mm
r_accum_thickFloatRequiredright accumbens area mean cortical thickness mm
r_pallidum_thickFloatRequiredright pallidum mean cortical thickness mm
r_hippocampus_thickFloatRequiredright hippocampus mean cortical thickness mm
r_caudate_thickFloatRequiredright caudate mean cortical thickness mm
r_putamen_thickFloatRequiredright putamen mean cortical thickness mm
r_amygdala_thickFloatRequiredright amygdala mean cortical thickness mm
r_caudal_midfront_thickFloatRequiredright caudal middle frontal mean cortical thickness mm
r_caudal_antcing_thickFloatRequiredright caudal anterior cingulate mean cortical thickness mm
r_cuneus_thickFloatRequiredright cuneus mean cortical thickness mm
r_fusiform_thickFloatRequiredright fusiform mean cortical thickness mm
r_entorhinal_thickFloatRequiredright entorhinal mean cortical thickness mm
r_infer_temporal_thickFloatRequiredright inferior temporal mean cortical thickness mm
r_infer_parietal_thickFloatRequiredright inferior parietal mean cortical thickness mm
r_lat_orbfront_thickFloatRequiredright lateral orbitofrontal mean cortical thickness mm
r_lingual_thickFloatRequiredright lingual mean cortical thickness mm
r_isthmus_cingul_thickFloatRequiredright isthmus cingulate mean cortical thickness mm
r_lat_occipital_thickFloatRequiredright lateral occipital mean cortical thickness mm
r_parahippocampal_thickFloatRequiredright parahippocampal mean cortical thickness mm
r_paracentral_thickFloatRequiredright paracentral mean cortical thickness mm
r_med_orbfront_thickFloatRequiredright medial orbitofrontal mean cortical thickness mm
r_midtemp_thickFloatRequiredright middle temporal mean cortical thickness mm
r_basal_foreb_thickFloatRequiredright basal forebrain mean cortical thickness mm
l_accum_thickFloatRequiredleft accumbens area mean cortical thickness mm
r_pars_opercularis_thickFloatRequiredright pars opercularis mean cortical thickness mm
r_pars_orbitalis_thickFloatRequiredright pars orbitalis mean cortical thickness mm
optic_chiasm_thickFloatRequiredoptic chiasm mean cortical thickness mm
l_supramarginal_thickFloatRequiredleft supramarginal mean cortical thickness mm
l_sup_temporal_thickFloatRequiredleft superior temporal mean cortical thickness mm
l_insula_thickFloatRequiredleft insula mean cortical thickness mm
l_transverse_temp_thickFloatRequiredleft transverse temporal mean cortical thickness mm
r_rostral_midfront_thickFloatRequiredright rostral middle frontal mean cortical thickness mm
r_rostral_antcing_thickFloatRequiredright rostral anterior cingulate mean cortical thickness mm
r_precuneus_thickFloatRequiredright precuneus mean cortical thickness mm
r_precentral_thickFloatRequiredright precentral mean cortical thickness mm
r_post_cingulate_thickFloatRequiredright posterior cingulate mean cortical thickness mm
r_postcentral_thickFloatRequiredright postcentral mean cortical thickness mm
r_pericalcarine_thickFloatRequiredright pericalcarine mean cortical thickness mm
r_pars_triangularis_thickFloatRequiredright pars triangularis mean cortical thickness mm
cer_vermal_lobs_vi_vii_thickFloatRequiredcerebellar vermal lobules VI-VII mean cortical thickness mm
l_vessel_thickFloatRequiredleft vessel mean cortical thickness mm
r_sup_parietal_thickFloatRequiredright superior parietal mean cortical thickness mm
r_sup_frontal_thickFloatRequiredright superior frontal mean cortical thickness mm
l_sup_frontal_thickFloatRequiredleft superior frontal mean cortical thickness mm
l_sup_parietal_thickFloatRequiredleft superior parietal mean cortical thickness mm
l_postcentral_thickFloatRequiredleft postcentral mean cortical thickness mm
l_post_cingulate_thickFloatRequiredleft posterior cingulate mean cortical thickness mm
l_pars_triangularis_thickFloatRequiredleft pars triangularis mean cortical thickness mm
l_pericalcarine_thickFloatRequiredleft pericalcarine mean cortical thickness mm
l_rostral_antcing_thickFloatRequiredleft rostral anterior cingulate mean cortical thickness mm
l_rostral_midfront_thickFloatRequiredleft rostral middle frontal mean cortical thickness mm
l_precentral_thickFloatRequiredleft precentral mean cortical thickness mm
l_basal_foreb_thickFloatRequiredleft basal forebrain mean cortical thickness mm
r_sup_temporal_thickFloatRequiredright superior temporal mean cortical thickness mm
r_supramarginal_thickFloatRequiredright supramarginal mean cortical thickness mm
r_transverse_temp_thickFloatRequiredright transverse temporal mean cortical thickness mm
r_insula_thickFloatRequiredright insula mean cortical thickness mm
l_pars_orbitalis_thickFloatRequiredleft pars orbitalis mean cortical thickness mm
l_pars_opercularis_thickFloatRequiredleft pars opercularis mean cortical thickness mm
l_paracentral_thickFloatRequiredleft paracentral mean cortical thickness mm
l_parahippocampal_thickFloatRequiredleft parahippocampal mean cortical thickness mm
l_midtemp_thickFloatRequiredleft middle temporal mean cortical thickness mm
l_med_orbfront_thickFloatRequiredleft medial orbitofrontal mean cortical thickness mm
l_lingual_thickFloatRequiredleft lingual mean cortical thickness mm
l_lat_orbfront_thickFloatRequiredleft lateral orbitofrontal mean cortical thickness mm
l_lat_occipital_thickFloatRequiredleft lateral occipital mean cortical thickness mm
l_isthmus_cingul_thickFloatRequiredleft isthmus cingulate mean cortical thickness mm
l_lat_ventricle_thickFloatRequiredleft lateral ventricle mean cortical thickness mm
l_infer_latventr_thickFloatRequiredleft inferior lateral ventricle mean cortical thickness mm
l_cer_exterior_thickFloatRequiredleft cerebellum exterior mean cortical thickness mm
l_cer_white_matter_thickFloatRequiredleft cerebellum white matter mean cortical thickness mm
brain_stem_thickFloatRequiredbrain stem mean cortical thickness mm
l_hippocampus_thickFloatRequiredleft hippocampus mean cortical thickness mm
third_ventricle_thickFloatRequired3rd ventricle mean cortical thickness mm
fourth_ventricle_thickFloatRequired4th ventricle mean cortical thickness mm
l_putamen_thickFloatRequiredleft putamen mean cortical thickness mm
l_pallidum_thickFloatRequiredleft pallidum mean cortical thickness mm
l_thalamus_proper_thickFloatRequiredleft thalamus proper mean cortical thickness mm
l_caudate_thickFloatRequiredleft caudate mean cortical thickness mm
l_amygdala_thickFloatRequiredleft amygdala mean cortical thickness mm
l_caudal_antcing_thickFloatRequiredleft caudal anterior cingulate mean cortical thickness mm
l_caudal_midfront_thickFloatRequiredleft caudal middle frontal mean cortical thickness mm
l_cuneus_thickFloatRequiredleft cuneus mean cortical thickness mm
l_entorhinal_thickFloatRequiredleft entorhinal mean cortical thickness mm
l_fusiform_thickFloatRequiredleft fusiform mean cortical thickness mm
l_infer_parietal_thickFloatRequiredleft inferior parietal mean cortical thickness mm
l_infer_temporal_thickFloatRequiredleft inferior temporal mean cortical thickness mm
l_ventral_dc_thickFloatRequiredleft ventral DC mean cortical thickness mm
cer_vermal_lobs_iv_thickFloatRequiredcerebellar vermal lobules I-V mean cortical thickness mm
csf_thicknessFloatRequiredCSF mean cortical thickness mm
cer_verman_lobs_viii_x_thickFloatRequiredcerebellar verman lobules VIII-X mean cortical thickness mm
r_ventral_dc_thickFloatRequiredright ventral DC mean cortical thickness mm
l_precuneus_thickFloatRequiredleft precuneus mean cortical thickness mm
grey_matter_cortex_thick_fFileRequiredFile associated with Grey matter cortex mean cortical thickness
Data Structure

This page displays the data structure defined for the measure identified in the title and structure short name. The table below displays a list of data elements in this structure (also called variables) and the following information:

  • Element Name: This is the standard element name
  • Data Type: Which type of data this element is, e.g. String, Float, File location.
  • Size: If applicable, the character limit of this element
  • Required: This column displays whether the element is Required for valid submissions, Recommended for valid submissions, Conditional on other elements, or Optional
  • Description: A basic description
  • Value Range: Which values can appear validly in this element (case sensitive for strings)
  • Notes: Expanded description or notes on coding of values
  • Aliases: A list of currently supported Aliases (alternate element names)
  • For valid elements with shared data, on the far left is a Filter button you can use to view a summary of shared data for that element and apply a query filter to your Cart based on selected value ranges

At the top of this page you can also:

  • Use the search bar to filter the elements displayed. This will not filter on the Size of Required columns
  • Download a copy of this definition in CSV format
  • Download a blank CSV submission template prepopulated with the correct structure header rows ready to fill with subject records and upload

Please email the The NDA Help Desk with any questions.

Distribution for DataStructure: antsvol01 and Element:
Chart Help

Filters enable researchers to view the data shared in NDA before applying for access or for selecting specific data for download or NDA Study assignment. For those with access to NDA shared data, you may select specific values to be included by selecting an individual bar chart item or by selecting a range of values (e.g. interview_age) using the "Add Range" button. Note that not all elements have appropriately distinct values like comments and subjectkey and are not available for filtering. Additionally, item level detail is not always provided by the research community as indicated by the number of null values given.

Filters for multiple data elements within a structure are supported. Selections across multiple data structures will be supported in a future version of NDA.