|
subjectkey |
GUID |
|
Required |
The NDAR Global Unique Identifier (GUID) for research subject |
NDAR*
|
|
|
|
src_subject_id |
String |
20
|
Required |
Subject ID how it's defined in lab/project |
|
|
|
Query
|
img03_id |
Integer |
|
Required |
Corresponds to row_id in image03 data structure, mapping derivative to source record in image03 |
|
|
|
|
interview_date |
Date |
|
Required |
Date on which the interview/genetic test/sampling/imaging/biospecimen was completed. MM/DD/YYYY |
|
|
|
|
interview_age |
Integer |
|
Required |
Age in months at the time of the interview/test/sampling/imaging. |
0::1440
|
Age is rounded to chronological month. If the research participant is 15-days-old at time of interview, the appropriate value would be 0 months. If the participant is 16-days-old, the value would be 1 month.
|
|
Query
|
experiment_id |
Integer |
|
Required |
ID for the Experiment/settings/run |
|
|
|
|
sex |
String |
20
|
Required |
Sex of subject at birth |
M;F; O; NR
|
M = Male; F = Female; O=Other; NR = Not reported
|
gender |
|
file_source |
String |
1,024
|
Required |
File name/location |
|
|
|
Query
|
origin_dataset_id |
Integer |
|
Required |
Origin dataset Id |
|
|
|
Query
|
pipeline |
String |
100
|
Required |
Pipeline name |
|
|
|
Query
|
pipeline_script |
String |
255
|
Required |
File from pipeline used to derive output |
|
|
|
Query
|
pipeline_type |
String |
255
|
Required |
Description of pipeline platform (i.e., LONI, NITRC-CE, NiPype) |
|
|
|
|
pipeline_tools |
String |
255
|
Required |
Specific tools used in a pipeline (i.e., FreeSurfer, FSL, ANTs) |
|
|
|
Query
|
pipeline_version |
String |
255
|
Required |
Version assigned to pipeline |
|
|
|
|
atlas |
String |
255
|
Required |
Atlas |
|
|
|
|
atlas_version |
String |
255
|
Required |
Atlas version |
|
|
|
Query
|
brain_stem_vol |
Float |
|
Required |
Brain stem volume (mm3) |
|
|
|
Query
|
l_accumb_vol |
Float |
|
Required |
Left accumbens area volume (mm3) |
|
|
|
Query
|
l_amygdala_vol |
Float |
|
Required |
Left amygdala volume (mm3) |
|
|
|
Query
|
caudate_left_volume |
Float |
|
Required |
MRI Variables: Caudate left volume (mm3) (includes head and body, excludes tail) |
|
|
|
Query
|
l_hippocampus_vol |
Float |
|
Required |
Left hippocampus volume (mm3) |
|
|
|
Query
|
l_pallidum_vol |
Float |
|
Required |
Left pallidum volume (mm3) |
|
|
|
Query
|
l_putamen_vol |
Float |
|
Required |
Left putamen volume mm3 |
|
|
|
Query
|
l_thalamus_proper_vol |
Float |
|
Required |
Left thalamus proper volume mm3 |
|
|
|
Query
|
r_accumb_vol |
Float |
|
Required |
Right accumbens area volume (mm3) |
|
|
|
Query
|
r_amygdala_vol |
Float |
|
Required |
Right amygdala volume (mm3) |
|
|
|
Query
|
caudate_right_volume |
Float |
|
Required |
MRI Variables: Caudate right volume (mm3) (includes head and body, excludes tail) |
|
|
|
Query
|
r_hippocampus_vol |
Float |
|
Required |
Right hippocampus volume (mm3) |
|
|
|
Query
|
r_pallidum_vol |
Float |
|
Required |
Right pallidum volume (mm3) |
|
|
|
Query
|
r_putamen_vol |
Float |
|
Required |
Right putamen volume mm3 |
|
|
|
Query
|
r_thalamus_proper_vol |
Float |
|
Required |
Right thalamus proper volume mm3 |
|
|
|
Query
|
csf_volume |
Float |
|
Required |
MRI Variables: CSF volume (mm3) |
|
|
|
|
derived_files |
File |
|
Required |
An archive of the files produced by the pipeline |
|
|
|
|
t1_te |
String |
500
|
Recommended |
Echo time for T1-weighted scan |
|
|
|
|
t1_resolution |
String |
500
|
Recommended |
TI-weighted image resolution |
|
|
|
|
t1_fov |
String |
500
|
Recommended |
Field of view TI-weighted scan |
|
|
|
|
t2_scan_types |
String |
500
|
Recommended |
T2-weighted scan type (e.g. TSE, 3D-SPACE) |
|
|
|
|
t2_tr |
String |
500
|
Recommended |
Repetition time for T2-weighted scan |
|
|
|
|
t2_te |
String |
500
|
Recommended |
Echo time for T2-weighted scan |
|
|
|
|
t2_resolution |
String |
500
|
Recommended |
T2-weighted image resolution |
|
|
|
|
t2_fov |
String |
500
|
Recommended |
Field of view T2-weighted scan |
|
|
|
|
citation |
String |
500
|
Recommended |
If available, provide a citation (or citations) for your overall study design, including the image acquisition protocol. |
|
|
|
|
subcort_seg_method |
String |
500
|
Recommended |
Describe the segmentation method used to generate subcortical volumes. |
|
|
|
|
subcort_seg_citation |
String |
500
|
Recommended |
If available, provide a citation (or citations) for the subcortical segmentation method. |
|
|
|
|
icv_method |
String |
500
|
Recommended |
Describe the method used to generate intracranial volume. |
|
|
|
|
icv_method_citation |
String |
500
|
Recommended |
If available, provide a citation (or citations) for the method used to generate intracranial volume. |
|
|
|
|
scan_detaiis_compiete |
Integer |
|
Recommended |
Was the Scan Details completed? |
0 :: 2
|
0= Incomplete; 1= Unverified; 2= Complete
|
|
|
age_voiume |
Integer |
|
Recommended |
Age at subcortical volume measurement |
|
Age In Years
|
|
|
thalamus |
Float |
|
Recommended |
Thalamus |
|
Volume
|
|
|
caudate |
Float |
|
Recommended |
Caudate |
|
Volume
|
|
|
putamen |
Float |
|
Recommended |
Putamen |
|
Volume
|
|
|
pallidum |
Float |
|
Recommended |
Pallidum |
|
Volume
|
|
|
hippocampus |
Float |
|
Recommended |
Hippocampus |
|
Volume
|
|
|
age_scan |
Integer |
|
Recommended |
Age at Scan |
|
Age In Years
|
|
|
amygdala |
Float |
|
Recommended |
Amygdala |
|
Volume
|
|
|
accumbens |
Float |
|
Recommended |
Accumbens |
|
Volume
|
|
|
icv |
Float |
|
Recommended |
ICV |
|
Volume
|
|
|
subcortical_volume_complete |
Integer |
|
Recommended |
Was the subcortical volume measurement completed? |
0 :: 2
|
0= Incomplete; 1= Unverified; 2= Complete
|
|
|
scannersite |
String |
500
|
Recommended |
Location where scan was acquired |
|
|
|
|
fieldstrength |
String |
500
|
Recommended |
Strength of a magnetic field in Tesla |
|
|
|
|
platform |
String |
255
|
Recommended |
Name of particular experiment platform |
|
|
|
|
coil |
String |
500
|
Recommended |
Receiver coil used |
|
|
|
|
t1_scan_types |
String |
500
|
Recommended |
T1-weighted scan type (e.g. MPRAGE, TSE, FLASH) |
|
|
|
|
t1_tr |
String |
500
|
Recommended |
Repetition time for TI-weighted scan |
|
|
|