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Frequently Asked Questions


NDA Help Center

Filter Cart

The Filter Cart provides a way to query and access data for which you may be interested.  There are multiple places to go query and Add to Filter Cart (Sometimes called Download).  

A few points related to the filter cart are important to understand with the NDA Query/Filter implementation: 

First, the filter cart is populated asyncronously.  So, when you add subjects, sometimes it may take a few minutes to populate.  You can continue to do other things during this time. 

When you are adding your first filter, all data associated with your query will be added to the filter cart (whether it be a collection, a concept, a study, a data structure/elment or subjects). Not all data available for the subjects selected will necessarily be displayed.  For example, if you select the NDA imaging structure image03, and further restrict that query to scan_type fMRI, only fMRI images will appear and only the image03 structure will be available.  However, if you want to see all of the clinical and phenotype, then select, "Find All Subject Data" to see all the data avaialble for those subjects.  

when a secord or third filter is applied, an AND condition is used to determine the subjects that are exist in all filters.  If the subject does not appear in any filter, that subjects data will be excluded from your filter cart. Given the sparcity of data in the NDA, it is possible for no subjects to appear across filters.  If that happens, clear your filter cart, and start over.  

The NDA is looking to enhance query/filtering.  Until additional tools become available, it is best to package more data than you need and then package and download the data and use other tools to further restrict and analyze the data.  If you have any questions on data access, are interested in using avaialble web services or need help accessing data, please contact us for assistance.  

Frequently Asked Questions



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NDAR provides a single access to de-identified autism research data. For permission to download data, you will need an NDAR account with approved access to NDAR or a connected repository (AGRE, IAN, or the ATP). For NDAR access, you need to be a research investigator sponsored by an NIH recognized institution with federal wide assurance. See Request Access for more information.

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The filters you have selected from various query interfaces will be stored here, in the 'Filter Cart'. The database will be queried using filters added to your 'Filter Cart', when multiple filters are defined, each will be executed using 'AND' logic, so with each filter that is applied the result set gets smaller.

From the 'Filter Cart' you can inspect each of the filters that have been defined, and you also have the option to remove filters. The 'Filter Cart' itself will display the number of filters applied along with the number of subjects that are identified by the combination of those filters. For example a GUID filter with two subjects, followed by a GUID filter for just one of those subjects would return only data for the subject that is in both GUID filters.

If you have a question about the filter cart, or underlying filters please contact the help desk at The NDA Help Desk

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1 Numbers reported are subjects by age
New Trial
New Project

Format should be in the following format: Activity Code, Institute Abbreviation, and Serial Number. Grant Type, Support Year, and Suffix should be excluded. For example, grant 1R01MH123456-01A1 should be entered R01MH123456

Please select an experiment type below

SelectExperiment IdExperiment NameExperiment Type
  • Select One
  • EEG
  • EGG
  • Eye Tracking
  • Omics
  • fMRI
Created On
955Food Choice TaskfMRI06/21/2018
953Shallow EpisodicfMRI06/20/2018
952Semantic EncodingfMRI06/20/2018
951Resting StatefMRI06/20/2018
949Resting StatefMRI06/18/2018
943Emotional Face TaskfMRI06/13/2018
941Meridians localizerfMRI06/07/2018
940V1 localizer movingDotsfMRI06/07/2018
938MT localizer dots movingDotsfMRI06/07/2018
937MT localizer gratings movingDotsfMRI06/07/2018
936V1 localizer peripheryfMRI06/07/2018
935Contrast peripheryfMRI06/07/2018
934MT localizer peripheryfMRI06/07/2018
933Pilot01: Posner Cueing with st-tACSEye Tracking06/06/2018
932Social- Theory of Mind Localizer TaskfMRI06/01/2018
931Faces TaskfMRI05/31/2018
929Moral RatingfMRI05/30/2018
928Pain Detection fMRI05/30/2018
927Reward TaskfMRI05/30/2018
926Go no Go TaskfMRI05/30/2018
924EARLI Placenta WGBSOmics05/24/2018
923Anxiety-CBT fMRI (pre-post) - Version 4 BlockfMRI05/15/2018
922Anxiety-CBT fMRI (pre-post) - Version 3 BlockfMRI05/15/2018
921Anxiety-CBT fMRI (pre-post) - Version 2 BlockfMRI05/15/2018
920Anxiety-CBT fMRI (pre-post) - Version 1 BlockfMRI05/15/2018
919Neural overlap in item representations across episodes impairs context memoryfMRI05/11/2018
918ReferenceTissue: U01MH106892_Brain_Amplicon_SeqOmics05/08/2018
914PFC analysis in bloodOmics04/27/2018
913Task and emotional content driven visual competitionfMRI04/27/2018
912Task and emotional content driven visual competitionEEG04/23/2018
911Resting StatefMRI04/20/2018
910Modified Monetary Incentive Delay fMRI04/20/2018
908Resting State Pre-Stress Visit 1fMRI04/20/2018
907Montreal Imaging Stress Task Visit 1fMRI04/18/2018
9062-back Post-Stress Visit 1fMRI04/18/2018
9051-back Post-Stress Visit 1fMRI04/18/2018
9040-back Post-Stress Visit 1fMRI04/18/2018
9032-back Pre-Stress Visit 1fMRI04/18/2018
9021-back Pre-Stress Visit 1fMRI04/18/2018
9010-back Pre-Stress Visit 1fMRI04/18/2018
899Investigating a Neurobehavioral Mechanism of Paranoia - Resting State ScansfMRI04/06/2018
Collection - Add Experiment
Add Supporting Documentation
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Please enter the name of the data structure to search or if your definition does not exist, please upload that definition so that it can be appropriately defined for submission. Multiple data structures may be associated with a single Data Expected entry. Please add only one data structure per assessment.






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Collection Owners and those with Collection Administrator permission, may edit a collection. The following is currently available for Edit on this page:


Title, investigators, and Collection Description may be edited along with the Collection Phase. For Collection Phase, the options Pre-enrollment, Enrollment, and Completed can be chosen allowing the Collection Owner to indicate the stage of data collection.

Funding Source

The ability to associate the funding source for the project is provided. For NIH funded grants, linkage to Project Reporter information (e.g. R01MH123456) is supported. Projects funded by others, including the URL of the project, are listed. Non NIH funded projects will become available here to link that data with the appropriate funding agency.

Supporting Documentation

Any documents related to the project may be uploaded clarifying the data or acquisition methods used may be uploaded and made available here. The default is to share these documents to the general public. An option to share only to qualified Researchers is also an option.

Clinical Trials

For clinical trials, the option to link to the clinical trial in clinicaltrials.gov is optionally provided.

Collection Summary Collection Charts
Collection Title Collection Investigators Collection Description
Autism Genetics, Phase II: Increasing Representation of Human Diversity
Daniel Geschwind 
Autism Spectrum Disorder (ASD) is a common, often devastating neuropsychiatric condition with largely unknown pathophysiology. Although ASD has a multifactorial etiology, it encompasses a large genetic component. The investigators in this proposal aim to continue and enhance our collaborative effort that has produced significant advances in our understanding of ASD over the last four years and generated highly successful, open data and biomaterials resources for the research community, the NIMH Genetics Initiative and the Autism Genetic Resource Exchange (AGRE). Our Network has met or exceeded our original aims. We have built patient resources for research, identified rare and common ASD susceptibility alleles, defined models of ASD genetic susceptibility, provided evidence for convergent pathophysiology, and led development of animal and cell culture models. Here we propose to take a major new direction, filling a significant gap in ASD research, by recruiting underserved subjects of self-reported African ancestry (African-American; AA), an important population that has not previously been well-represented in ASD genetics research. Our Network involves six research sites and the AGRE DCC, collaborating in a systematic, comprehensive investigation of ASD genetics in order to identify rare mutations, chromosomal abnormalities, and common variation contributing to ASD susceptibility in the AA population. Specifically, we will enrich existing resources by recruiting at least 600 AA probands and additional family members. Our recruitment plan includes an embedded health disparities project that will evaluate access to care for AAs with ASD and clarify factors influencing participation of AA individuals in genetic research. We will employ novel methods to define the ancestral origin of specific chromosomal segments and ascertain the background on which susceptibility alleles occur. We will perform follow up GWA on ASD-related endophenotypes or co-variates, such as language delay, sex and head circumference. In parallel, we will conduct whole exome sequencing (WES) and analysis of copy number variation (CNV) using 2.5M SNP arrays yielding high resolution molecular karyotypes and providing a resource on genome-wide CNV and coding sequence variation (SNV) in ASD. Gene expression profiling and network analysis will be used to prioritize variants. Genetic risk factors identified in the mostly European samples will be tested for association in the AA sample to determine whether these cohorts share the same genetic risk factors, using a sample size providing power to replicate previous associations and to identify rare, recurrent CNV and SNV. The observation of new forms or different population frequencies of ASD-related variation in this sample as well as the sharing of most CNV and SNV with other cohorts are both outcomes that will have great significance for future studies and clinical care. As has been our practice, our Network will make all phenotypic and genotype data accessible via the internet on a rolling basis, further enhancing the value of this resource to the community.
Funding Completed
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NIH - Extramural None

R01MH100027-06 Autism Genetics, Phase II: Increasing Representation of Human Diversity 03/25/2013 02/28/2018 6720 1870 UNIVERSITY OF CALIFORNIA LOS ANGELES $14,025,747.00

Collection Owners and those with Collection Administrator permission, may edit a collection. The following is currently available for Edit on this page:


To create a new Omics, eye tracking, fMRI, or EEG experiment, press the "+ New Experiment" button. Once an experiment is created, then raw files for these types of experiments should be provided, associating the experiment – through Experiment_ID – with the metadata defined in the experiments interface.

IDNameCreated DateStatusType
3262013-489 targeted linkage peaks06/12/2015ApprovedOmics
474Single All AGRE, MBV33-10 (CHOP)06/07/2016ApprovedOmics
475MB1-10 (CHOP)06/07/2016ApprovedOmics
517Exomes 2014-407_UCLA; 2014-207_UCSF; 2016-912311/05/2016ApprovedOmics

Collection Owners and those with Collection Administrator permission, may edit a collection. The following is currently available for Edit on this page:

Shared Data

Data structures with the number of subjects submitted and shared are provided.

Diagnostic Odyssey Instrument Clinical Assessments 396
Research Subject Clinical Assessments 1319

Collection Owners and those with Collection Administrator permission, may edit a collection. The following is currently available for Edit on this page:


Publications relevant to NDAR data are listed below. Most displayed publications have been associated with the grant within Pubmed. Use the "+ New Publication" button to add new publications. Publications relevant/not relevant to data expected are categorized. Relevant publications are then linked to the underlying data by selecting the Create Study link. Study provides the ability to define cohorts, assign subjects, define outcome measures and lists the study type, data analysis and results. Analyzed data and results are expected in this way.

PubMed IDStudyTitleJournalAuthorsDateStatus
29439242Create StudyShared molecular neuropathology across major psychiatric disorders parallels polygenic overlap.Science (New York, N.Y.)Gandal MJ, Haney JR, Parikshak NN, Leppa V, Ramaswami G, Hartl C, Schork AJ, Appadurai V, Buil A, Werge TM, Liu C, White KP, Horvath S, Geschwind DHFebruary 2018Not Determined
29307494Create StudyThe Dynamic Landscape of Open Chromatin during Human Cortical Neurogenesis.CellDe La Torre-Ubieta L, Stein JL, Won H, Opland CK, Liang D, Lu D, Geschwind DHJanuary 2018Not Determined
29057378Create StudySystems biology in the central nervous system: a brief perspective on essential recent advancements.Current opinion in systems biologyDougherty JD, Yang C, Lake AMJune 2017Not Relevant
29020636Create StudySelf-Organized Cerebral Organoids with Human-Specific Features Predict Effective Drugs to Combat Zika Virus Infection.Cell reportsWatanabe M, Buth JE, Vishlaghi N, De La Torre-Ubieta L, Taxidis J, Khakh BS, Coppola G, Pearson CA, Yamauchi K, Gong D, Dai X, Damoiseaux R, Aliyari R, Liebscher S, Schenke-Layland K, Caneda C, Huang EJ, Zhang Y, Cheng G, Geschwind DH, Golshani P, Sun R, Novitch BGOctober 2017Not Relevant
28533516Create StudyASD restricted and repetitive behaviors associated at 17q21.33: genes prioritized by expression in fetal brains.Molecular psychiatryCantor RM, Navarro L, Won H, Walker RL, Lowe JK, Geschwind DHMay 2017Relevant
28316770Create StudyExaggerated CpH methylation in the autism-affected brain.Molecular autismEllis SE, Gupta S, Moes A, West AB, Arking DEJanuary 2017Not Determined
27919067Create StudyGenome-wide changes in lncRNA, splicing, and regional gene expression patterns in autism.NatureParikshak NN, Swarup V, Belgard TG, Irimia M, Ramaswami G, Gandal MJ, Hartl C, Leppa V, Ubieta LT, Huang J, Lowe JK, Blencowe BJ, Horvath S, Geschwind DHDecember 2016Not Relevant
27814521Create StudyThe Central Nervous System and the Gut Microbiome.CellSharon G, Sampson TR, Geschwind DH, Mazmanian SKNovember 2016Not Relevant
27760116Create StudyChromosome conformation elucidates regulatory relationships in developing human brain.NatureWon H, De La Torre-Ubieta L, Stein JL, Parikshak NN, Huang J, Opland CK, Gandal MJ, Sutton GJ, Hormozdiari F, Lu D, Lee C, Eskin E, Voineagu I, Ernst J, Geschwind DHOctober 2016Not Relevant
27677376Create StudyDexmedetomidine Protects Against Glucocorticoid Induced Progenitor Cell Apoptosis in Neonatal Mouse Cerebellum.The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal ObstetriciansO'Connor SD, Cabrera OH, Dougherty JD, Singh S, Swiney BS, Salinas-Contreras P, Farber NB, Noguchi KKSeptember 2016Not Relevant
27569545Study (393)Rare Inherited and De Novo CNVs Reveal Complex Contributions to ASD Risk in Multiplex Families.American journal of human geneticsLeppa VM, Kravitz SN, Martin CL, Andrieux J, Le Caignec C, Martin-Coignard D, Dybuncio C, Sanders SJ, Lowe JK, Cantor RM, Geschwind DHSeptember 2016Relevant
27219343Create StudyTranscriptome analysis of cortical tissue reveals shared sets of downregulated genes in autism and schizophrenia.Translational psychiatryEllis SE, Panitch R, West AB, Arking DEMay 2016Not Relevant
26998600Create StudySchizophrenia genetics complements its mechanistic understanding.Nature neuroscienceRuzzo EK, Geschwind DHApril 2016Not Relevant
26892004Create StudyGene expression in human brain implicates sexually dimorphic pathways in autism spectrum disorders.Nature communicationsWerling DM, Parikshak NN, Geschwind DH2016Not Relevant
26824476Create StudyReduced CYFIP1 in Human Neural Progenitors Results in Dysregulation of Schizophrenia and Epilepsy Gene Networks.PloS oneNebel RA, Zhao D, Pedrosa E, Kirschen J, Lachman HM, Zheng D, Abrahams BS2016Not Relevant
26627310Create StudyJAKMIP1, a Novel Regulator of Neuronal Translation, Modulates Synaptic Function and Autistic-like Behaviors in Mouse.NeuronBerg JM, Lee C, Chen L, Galvan L, Cepeda C, Chen JY, Peñagarikano O, Stein JL, Li A, Oguro-Ando A, Miller JA, Vashisht AA, Starks ME, Kite EP, Tam E, Gdalyahu A, Al-Sharif NB, Burkett ZD, White SA, Fears SC, Levine MS, Wohlschlegel JA, Geschwind DHDecember 16, 2015Not Relevant
26590343Create StudyCorrespondence between Resting-State Activity and Brain Gene Expression.NeuronWang GZ, Belgard TG, Mao D, Chen L, Berto S, Preuss TM, Lu H, Geschwind DH, Konopka GNovember 18, 2015Not Relevant
26500678Create StudyMoving from capstones toward cornerstones: successes and challenges in applying systems biology to identify mechanisms of autism spectrum disorders.Frontiers in geneticsKopp N, Climer S, Dougherty JD2015Not Relevant
26404826Create StudyGenetics and genomics of psychiatric disease.Science (New York, N.Y.)Geschwind DH, Flint JSeptember 25, 2015Not Relevant
26149713Create StudySystems biology and gene networks in neurodevelopmental and neurodegenerative disorders.Nature reviews. GeneticsParikshak NN, Gandal MJ, Geschwind DHAugust 2015Not Relevant
26076356Create StudyReciprocal Relationship between Head Size, an Autism Endophenotype, and Gene Dosage at 19p13.12 Points to AKAP8 and AKAP8L.PloS oneNebel RA, Kirschen J, Cai J, Woo YJ, Cherian K, Abrahams BS2015Not Determined
25973164Create StudyRecurrence rates provide evidence for sex-differential, familial genetic liability for autism spectrum disorders in multiplex families and twins.Molecular autismWerling DM, Geschwind DH2015Not Determined
25891009Create StudyGene hunting in autism spectrum disorder: on the path to precision medicine.The Lancet. NeurologyGeschwind DH, State MWNovember 2015Not Relevant
25789151Create StudyFmrp targets or not: long, highly brain-expressed genes tend to be implicated in autism and brain disorders.Molecular autismOuwenga RL, Dougherty JJanuary 2015Not Relevant
25727539Create StudySocial responsiveness, an autism endophenotype: genomewide significant linkage to two regions on chromosome 8.The American journal of psychiatryLowe JK, Werling DM, Constantino JN, Cantor RM, Geschwind DHMarch 1, 2015Not Determined
25682262Create StudyThe RNA-binding protein Celf6 is highly expressed in diencephalic nuclei and neuromodulatory cell populations of the mouse brain.Brain structure & functionMaloney, Susan E; Khangura, Eakta; Dougherty, Joseph DFebruary 15, 2015Not Relevant
25599223Create StudyPsychiatric genome-wide association study analyses implicate neuronal, immune and histone pathways.Nature neuroscienceFebruary 2015Not Determined
25494366Create StudyTranscriptome analysis reveals dysregulation of innate immune response genes and neuronal activity-dependent genes in autism.Nature communicationsGupta S, Ellis SE, Ashar FN, Moes A, Bader JS, Zhan J, West AB, Arking DE2014Not Determined
25360157Create StudyAlteration in basal and depolarization induced transcriptional network in iPSC derived neurons from Timothy syndrome.Genome medicineTian Y, Voineagu I, Paşca SP, Won H, Chandran V, Horvath S, Dolmetsch RE, Geschwind DHJanuary 2014Not Relevant
24618187Create StudyRecent challenges to the psychiatric diagnostic nosology: a focus on the genetics and genomics of neurodevelopmental disorders.International journal of epidemiologyKim YS, State MWApril 2014Not Determined
24574247Create StudyInvestigation of maternal genotype effects in autism by genome-wide association.Autism research : official journal of the International Society for Autism ResearchYuan H, Dougherty JDApril 2014Not Determined
24533643Create StudyReplication of linkage at chromosome 20p13 and identification of suggestive sex-differential risk loci for autism spectrum disorder.Molecular autismWerling DM, Lowe JK, Luo R, Cantor RM, Geschwind DH2014Not Determined
24453331Create StudyCell type-specific expression analysis to identify putative cellular mechanisms for neurogenetic disorders.The Journal of neuroscience : the official journal of the Society for NeuroscienceXu X, Wells AB, O'Brien DR, Nehorai A, Dougherty JDJanuary 22, 2014Not Determined
24341889Create StudyRNA-Seq optimization with eQTL gold standards.BMC genomicsEllis SE, Gupta S, Ashar FN, Bader JS, West AB, Arking DEDecember 2013Not Relevant
24290388Create StudyOrchestration of neurodevelopmental programs by RBFOX1: implications for autism spectrum disorder.International review of neurobiologyBill BR, Lowe JK, Dybuncio CT, Fogel BL2013Not Relevant
24290383Create StudyIdentifying essential cell types and circuits in autism spectrum disorders.International review of neurobiologyMaloney SE, Rieger MA, Dougherty JD2013Not Determined
24267887Create StudyIntegrative functional genomic analyses implicate specific molecular pathways and circuits in autism.CellParikshak NN, Luo R, Zhang A, Won H, Lowe JK, Chandran V, Horvath S, Geschwind DHNovember 21, 2013Not Determined
24183016Create StudyCortical evolution: judge the brain by its cover.NeuronGeschwind DH, Rakic POctober 30, 2013Not Determined
24147096Create StudyDefining the contribution of CNTNAP2 to autism susceptibility.PloS oneSampath S, Bhat S, Gupta S, O'Connor A, West AB, Arking DE, Chakravarti AJanuary 2013Not Relevant
24090431Create StudySFARI Gene 2.0: a community-driven knowledgebase for the autism spectrum disorders (ASDs).Molecular autismAbrahams BS, Arking DE, Campbell DB, Mefford HC, Morrow EM, Weiss LA, Menashe I, Wadkins T, Banerjee-Basu S, Packer AOctober 2013Not Relevant
23975140Create StudyDeNovoGear: de novo indel and point mutation discovery and phasing.Nature methodsRamu A, Noordam MJ, Schwartz RS, Wuster A, Hurles ME, Cartwright RA, Conrad DFOctober 2013Not Relevant
23933821Create StudyGenetic relationship between five psychiatric disorders estimated from genome-wide SNPs.Nature geneticsCross-Disorder Group of the Psychiatric Genomics Consortium, Lee SH, Ripke S, Neale BM, Faraone SV, Purcell SM, Perlis RH, Mowry BJ, Thapar A, Goddard ME, Witte JS, Absher D, Agartz I, Akil H, Amin F, Andreassen OA, Anjorin A, Anney R, Anttila V, Arking DE, Asherson P, Azevedo MH, Backlund L, Badner JA, Bailey AJ, et al.September 2013Not Determined
23840741Create StudyA Novel Stratification Method in Linkage Studies to Address Inter- and Intra-Family Heterogeneity in Autism.PloS oneTalebizadeh Z, Arking DE, Hu VWJanuary 2013Not Relevant
23722009Create StudyMapping connectivity in the developing brain.International journal of developmental neuroscience : the official journal of the International Society for Developmental NeuroscienceDennis EL, Thompson PMNovember 2013Not Relevant
23453885Create StudyIdentification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.Lancet (London, England)April 2013Not Relevant
23259942Create StudyThe autism sequencing consortium: large-scale, high-throughput sequencing in autism spectrum disorders.NeuronBuxbaum JD, Daly MJ, Devlin B, Lehner T, Roeder K, State MW, Autism Sequencing ConsortiumDecember 20, 2012Not Relevant

Relevant Publications
PubMed IDStudyTitleJournalAuthorsDate
28533516Create StudyASD restricted and repetitive behaviors associated at 17q21.33: genes prioritized by expression in fetal brains.Molecular psychiatryCantor RM, Navarro L, Won H, Walker RL, Lowe JK, Geschwind DHMay 2017
Data Expected
Data ExpectedTargeted EnrollmentInitial SubmissionSubjects SharedStatus
Ravens Coloured Progressive Matrices (CPM) info iconApproved
ADI-R info iconApproved
Ravens Standard Progressive Matrices (SPM) info iconApproved
Social Responsiveness Scale (SRS) info iconApproved
Social Communication Questionnaire (SCQ) info iconApproved
Demographics info iconApproved
ADOS info iconApproved
DAS-II: Differential Ability Scales info iconApproved
Peabody Picture Vocabulary Test, Fourth Edition info iconApproved
Vineland (Parent and Caregiver) info iconApproved
Medical History info iconApproved
Research Subject and Pedigree info iconApproved
Physical Exam info iconApproved
EHCI Diagnostic Odyssey Instrument info iconApproved
genomics/omics info iconApproved
Structure not yet defined

Collection Owners and those with Collection Administrator permission, may edit a collection. The following is currently available for Edit on this page:

Associated Studies

Studies that have been defined using data from a Collection are important criteria to determine the value of data shared. The number of subjects column displays the counts from this Collection that are included in a Study, out of the total number of subjects in that study. The Data Use column represents whether or not the study is a primary analysis of the data or a secondary analysis. State indicates whether the study is private or shared with the research community.

Study NameAbstractCollection/Study SubjectsData UsageState
No records found.