NIMH Data Archive - Data

Genomics

Neuroimaging

Phenotype¹

New Trial
Clinical Trial

¹ Numbers reported are subjects by age

New Project
Grant/Project Number

Format should be in the following format: Activity Code, Institute Abbreviation, and Serial Number. Grant Type, Support Year, and Suffix should be excluded. For example, grant 1R01MH123456-01A1 should be entered R01MH123456

Collection - Use Existing Experiment

To associate an experiment to the current collection, just select an axperiment from the table below then click the associate experiment button to persist your changes (saving the collection is not required). Note that once an experiment has been associated to two or more collections, the experiment will not longer be editable.

The table search feature is case insensitive and targets the experiment id, experiment name and experiment type columns. The experiment id is searched only when the search term entered is a number, and filtered using a startsWith comparison. When the search term is not numeric the experiment name is used to filter the results.

Select	Experiment Id	Experiment Name	Experiment Type	Created On

24	HI-NGS_R1	Omics	02/16/2011
475	MB1-10 (CHOP)	Omics	06/07/2016
490	Illumina Infinium PsychArray BeadChip Assay	Omics	07/07/2016
501	PharmacoBOLD Resting State	fMRI	07/27/2016
506	PVPREF	Omics	08/05/2016
509	ABC-CT Resting v2	EEG	08/18/2016
13	Comparison of FI expression in Autistic and Neurotypical Homo Sapiens	Omics	12/28/2010
18	AGRE/Broad Affymetrix 5.0 Genotype Experiment	Omics	01/06/2011
22	Stitching PCR Sequencing	Omics	02/14/2011
26	ASD_Methylation	Omics	03/01/2011
29	Microarray family 03 (father, mother, sibling)	Omics	03/24/2011
37	Standard paired-end sequencing of BCRs	Omics	04/19/2011
38	Illumina Mate-Pair BCR sequencing	Omics	04/19/2011
39	Custom Jumping Libraries	Omics	04/19/2011
40	Custom CapBP	Omics	04/19/2011
41	Immunofluorescence	Omics	05/11/2011
43	Autism brain sample genotyping, Illumina	Omics	05/16/2011
47	ARRA Autism Sequencing Collaboration at Baylor. SOLiD 4 System	Omics	08/01/2011
53	AGRE Omni1-quad	Omics	10/11/2011
59	AGP genotyping	Omics	04/03/2012
60	Ultradeep 454 sequencing of synaptic genes from postmortem cerebella of individuals with ASD and neurotypical controls	Omics	06/23/2012
63	Microemulsion PCR and Targeted Resequencing for Variant Detection in ASD	Omics	07/20/2012
76	Whole Genome Sequencing in Autism Families	Omics	01/03/2013
519	Resting	fMRI	11/08/2016
90	Genotyped IAN Samples	Omics	07/09/2013
91	NJLAGS Axiom Genotyping Array	Omics	07/16/2013
93	AGP genotyping (CNV)	Omics	09/06/2013
106	Longitudinal Sleep Study. H20 200. Channel set 2	EEG	11/07/2013
107	Longitudinal Sleep Study. H20 200. Channel set 3	EEG	11/07/2013
108	Longitudinal Sleep Study. AURA 200	EEG	11/07/2013
105	Longitudinal Sleep Study. H20 200. Channel set 1	EEG	11/07/2013
109	Longitudinal Sleep Study. AURA 400	EEG	11/07/2013
116	Gene Expression Analysis WG-6	Omics	01/07/2014
131	Jeste Lab UCLA ACEii: Charlie Brown and Sesame Street - Project 1	Eye Tracking	02/27/2014
132	Jeste Lab UCLA ACEii: Animacy - Project 1	Eye Tracking	02/27/2014
133	Jeste Lab UCLA ACEii: Mom Stranger - Project 2	Eye Tracking	02/27/2014
134	Jeste Lab UCLA ACEii: Face Emotion - Project 3	Eye Tracking	02/27/2014
145	AGRE/FMR1_Illumina.JHU	Omics	04/14/2014
146	AGRE/MECP2_Sanger.JHU	Omics	04/14/2014
147	AGRE/MECP2_Junior.JHU	Omics	04/14/2014
151	Candidate Gene Identification in familial Autism	Omics	06/09/2014
152	NJLAGS Whole Genome Sequencing	Omics	07/01/2014
154	Math Autism Study - Vinod Menon	fMRI	07/15/2014
155	Resting	fMRI	07/25/2014
156	Speech	fMRI	07/25/2014
159	Emotion	fMRI	07/25/2014
160	syllable contrast	EEG	07/29/2014
167	School-age naturalistic stimuli	Eye Tracking	09/19/2014
44	AGRE/Broad Affymetrix 5.0 Genotype Experiment	Omics	06/27/2011
45	Exome Sequencing of 20 Sporadic Cases of Autism Spectrum Disorder	Omics	07/15/2011

Collection - Add Experiment

Add Supporting Documentation

Funding Source:
URL:

To add an existing Data Structure, enter its title in the search bar. If you need to request changes, select the indicator "No, it requires changes to meet research needs" after selecting the Structure, and upload the file with the request changes specific to the selected Data Structure. Your file should follow the Request Changes Procedure. If the Data Structure does not exist, select "Request New Data Structure" and upload the appropriate zip file.

Use/Modify Existing Data Structure

Request New Data Structure

Targeted Enrollment:

Initial Submission Date:

Initial Share Date:

Data Structure Search:

Data Structures:

Submit

Request Submission Exemption

Not Eligible

The Data Expected list for this Collection shows some raw data as missing. Contact the NDA Help Desk with any questions.

Please confirm that you will not be enrolling any more subjects and that all raw data has been collected and submitted.

Collection Updated

Your Collection is now in Data Analysis phase and exempt from biannual submissions. Analyzed data is still expected prior to publication or no later than the project end date.

[CMS] Error

[CMS]

Unable to change collection phase where targeted enrollment is less than 90%

You have requested to move the sharing dates for the following assessments:

Data Expected Item	Original Sharing Date	New Sharing Date

Please provide a reason for this change, which will be sent to the Program Officers listed within this collection:

Explanation must be between 20 and 200 characters in length.

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Autism Brain Imaging Data Exchange #2039

General
Experiments (0)
Shared Data
Publications (88)
Data Expected (13)
Associated Studies (3)

Collection Title	Collection Investigators	Collection Description
Collection Title:	Autism Brain Imaging Data Exchange
Collection Investigators:	Michael Milham, MD, Ph.D.
Collection Description:	Autism spectrum disorders (ASD) are characterized by qualitative impairment in reciprocal social communication, as well as by repetitive, restricted, and stereotyped behaviors. Previously considered rare, ASD are now recognized to occur in more than 1% of children, causing immense suffering to individuals and their families. The complexity and heterogeneity of ASD make it necessary to obtain large-scale samples which are difficult to attain in any individual lab. In response, the Autism Brain Imaging Data Exchange (ABIDE) hereby provides previously collected resting state functional magnetic resonance imaging (R-fMRI) datasets from 539 individuals with ASD and 573 typical controls for the purpose of data sharing in the broader scientific community. This grass-root initiative involved 16 international sites, sharing 20 samples yielding 1112 datasets composed of both MRI data and an extensive array of phenotypic information common across nearly all sites (see below). This unprecedented effort is expected to facilitate discovery science and comparisons across samples.In accordance with HIPAA guidelines and 1000 Functional Connectomes Project / INDI protocols, all datasets are anonymous, with no protected health information included.
Data Repository:	NIMH Data Archive
Permission Group:
Collection Creation Date:	07/17/2013
Collection Phase:	Funding Completed
Collection Sub-Phase:	Close Out
Blinded Clinical Trial:	No
Total Funded Amount:	$801,614.00
Subjects Shared:	1,112

{"values":[]}

{"values":[["Not Defined",612],["Typical Control",29],["Autism Spectrum Mildly Affected",1],["Neurological Control",4],["Autism Spectrum Affected",271],["Autism Spectrum Severely Affected",195]]}

Loading Chart...

Funding Sources:

Funding Source Name	Funding Source URL
NIH - Extramural	None
Leon Levy Foundation	None
Joseph P. Healy	None
Stavros Niarchos Foundation	None

Supporting Documentation:

Grant Information:

Project Number	Project Title	Start Date	End Date	Planned Enrollment	Actual Enrollment	Organization	Funds Obligated
K23MH087770-01	Translational Developmental Neuroscience of Autism	01/01/2010	11/30/2014	Not Reported	Not Reported	NEW YORK UNIVERSITY SCHOOL OF MEDICINE	$643,638.00
R03MH096321-01	Enhancement of the 1000 Functional Connectome Project	01/16/2012	05/31/2014	Not Reported	Not Reported	NATHAN S. KLINE INSTITUTE FOR PSYCH RES	$157,976.00

Clinical Trials:

helpcenter.collection.general-tab

Collection - General Tab

Fields available for edit on the top portion of the page include:

Collection Title
Investigators
Collection Description
Collection Phase
Funding Source
Clinical Trials

Collection Phase: The current status of a research project submitting data to an NDA Collection, based on the timing of the award and/or the data that have been submitted.

Pre-Enrollment: The default entry made when the NDA Collection is created.
Enrolling: Data have been submitted to the NDA Collection or the NDA Data Expected initial submission date has been reached for at least one data structure category in the NDA Collection.
Data Analysis: Subject level data collection for the research project is completed and has been submitted to the NDA Collection. The NDA Collection owner or the NDA Help Desk may set this phase when they’ve confirmed data submission is complete and submitted subject counts match at least 90% of the target enrollment numbers in the NDA Data Expected. Data submission reminders will be turned off for the NDA Collection.
Funding Completed: The NIH grant award (or awards) associated with the NDA Collection has reached its end date. NDA Collections in Funding Completed phase are assigned a subphase to indicate the status of data submission.
- The Data Expected Subphase indicates that NDA expects more data will be submitted
- The Closeout Subphase indicates the data submission is complete.
- The Sharing Not Met Subphase indicates that data submission was not completed as expected.

Blinded Clinical Trial Status:

This status is set by a Collection Owner and indicates the research project is a double blinded clinical trial. When selected, the public view of Data Expected will show the Data Expected items and the Submission Dates, but the targeted enrollment and subjects submitted counts will not be displayed.
Targeted enrollment and subjects submitted counts are visible only to NDA Administrators and to the NDA Collection or as the NDA Collection Owner.
When an NDA Collection that is flagged Blinded Clinical Trial reaches the maximum data sharing date for that Data Repository (see https://nda.nih.gov/nda/sharing-regimen.html), the embargo on Data Expected information is released.

Funding Source

The organization(s) responsible for providing the funding is listed here.

Supporting Documentation

Users with Submission privileges, as well as Collection Owners, Program Officers, and those with Administrator privileges, may upload and attach supporting documentation. By default, supporting documentation is shared to the general public, however, the option is also available to limit this information to qualified researchers only.

Grant Information

Identifiable details are displayed about the Project of which the Collection was derived from. You may click in the Project Number to view a full report of the Project captured by the NIH.

Clinical Trials

Any data that is collected to support or further the research of clinical studies will be available here. Collection Owners and those with Administrator privileges may add new clinical trials.

Frequently Asked Questions

How does the NIMH Data Archive (NDA) determine which Permission Group data are submitted into?

During Collection creation, NDA staff determine the appropriate Permission Group based on the type of data to be submitted, the type of access that will be available to data access users, and the information provided by the Program Officer during grant award.
How do I know when a NDA Collection has been created?

When a Collection is created by NDA staff, an email notification will automatically be sent to the PI(s) of the grant(s) associated with the Collection to notify them.
Is a single grant number ever associated with more than one Collection?

The NDA system does not allow for a single grant to be associated with more than one Collection; therefore, a single grant will not be listed in the Grant Information section of a Collection for more than one Collection.
Why is there sometimes more than one grant included in a Collection?

In general, each Collection is associated with only one grant; however, multiple grants may be associated if the grant has multiple competing segments for the same grant number or if multiple different grants are all working on the same project and it makes sense to hold the data in one Collection (e.g., Cooperative Agreements).

Glossary

Administrator Privilege

A privilege provided to a user associated with an NDA Collection or NDA Study whereby that user can perform a full range of actions including providing privileges to other users.
Collection Owner

Generally, the Collection Owner is the contact PI listed on a grant. Only one NDA user is listed as the Collection owner. Most automated emails are primarily sent to the Collection Owner.
Collection Phase
The Collection Phase provides information on data submission as opposed to grant/project completion so while the Collection phase and grant/project phase may be closely related they are often different. Collection users with Administrative Privileges are encouraged to edit the Collection Phase. The Program Officer as listed in eRA (for NIH funded grants) may also edit this field. Changes must be saved by clicking the Save button at the bottom of the page. This field is sortable alphabetically in ascending or descending order. Collection Phase options include:
- Pre-Enrollment: A grant/project has started, but has not yet enrolled subjects.
- Enrolling: A grant/project has begun enrolling subjects. Data submission is likely ongoing at this point.
- Data Analysis: A grant/project has completed enrolling subjects and has completed all data submissions.
- Funding Completed: A grant/project has reached the project end date.
Collection Title

An editable field with the title of the Collection, which is often the title of the grant associated with the Collection.
Grant

Provides the grant number(s) for the grant(s) associated with the Collection. The field is a hyperlink so clicking on the Grant number will direct the user to the grant information in the NIH Research Portfolio Online Reporting Tools (RePORT) page.
Supporting Documentation

Various documents and materials to enable efficient use of the data by investigators unfamiliar with the project and may include the research protocol, questionnaires, and study manuals.
NIH Research Initiative

NDA Collections may be organized by scientific similarity into NIH Research Initiatives, to facilitate query tool user experience. NIH Research Initiatives map to one or multiple Funding Opportunity Announcements.
Permission Group

Access to shared record-level data in NDA is provisioned at the level of a Permission Group. NDA Permission Groups consist of one or multiple NDA Collections that contain data with the same subject consents.
Planned Enrollment

Number of human subject participants to be enrolled in an NIH-funded clinical research study. The data is provided in competing applications and annual progress reports.
Actual Enrollment

Number of human subjects enrolled in an NIH-funded clinical research study. The data is provided in annual progress reports.
NDA Collection

A virtual container and organization structure for data and associated documentation from one grant or one large project/consortium. It contains tools for tracking data submission and allows investigators to define a wide array of other elements that provide context for the data, including all general information regarding the data and source project, experimental parameters used to collect any event-based data contained in the Collection, methods, and other supporting documentation. They also allow investigators to link underlying data to an NDA Study, defining populations and subpopulations specific to research aims.
Data Use Limitations

Data Use Limitations (DULs) describe the appropriate secondary use of a dataset and are based on the original informed consent of a research participant. NDA only accepts consent-based data use limitations defined by the NIH Office of Science Policy.
Total Subjects Shared

The total number of unique subjects for whom data have been shared and are available for users with permission to access data.

Contact NDA Help Desk

ID	Name	Created Date	Status	Type
No records found.

helpcenter.collection.experiments-tab

Collection - Experiments

The number of Experiments included is displayed in parentheses next to the tab name. You may download all experiments associated with the Collection via the Download button. You may view individual experiments by clicking the Experiment Name and add them to the Filter Cart via the Add to Cart button.

Collection Owners, Program Officers, and users with Submission or Administrative Privileges for the Collection may create or edit an Experiment.

Please note: The creation of an NDA Experiment does not necessarily mean that data collected, according to the defined Experiment, has been submitted or shared.

Frequently Asked Questions

Can an Experiment be associated with more than one Collection?
Yes -see the “Copy” button in the bottom left when viewing an experiment. There are two actions that can be performed via this button:
1. Copy the experiment with intent for modifications.
2. Associate the experiment to the collection. No modifications can be made to the experiment.

Glossary

Experiment Status

An Experiment must be Approved before data using the associated Experiment_ID may be uploaded.
Experiment ID

The ID number automatically generated by NDA which must be included in the appropriate file when uploading data to link the Experiment Definition to the subject record.

Contact NDA Help Desk

Shared Data:

Title	Type	Number of Subjects
Advanced Normalization Tools (ANTs) Cortical Thickness	Imaging	1102
Autism Diagnostic Interview, Revised (ADI-R)	Clinical Assessments	379
Autism Diagnostic Observation Schedule (ADOS) - Module 2 (2007)	Clinical Assessments	5
Autism Diagnostic Observation Schedule (ADOS) - Module 4	Clinical Assessments	174
Autism Diagnostic Observation Schedule (ADOS)- Module 2	Clinical Assessments	4
Autism Diagnostic Observation Schedule (ADOS)- Module 3	Clinical Assessments	233
Autism Diagnostic Observation Schedule (ADOS)- Module 3 (2007)	Clinical Assessments	271
Autism Spectrum Quotient (AQ)	Clinical Assessments	56
Edinburgh Handedness Inventory	Clinical Assessments	370
Height and Weight	Clinical Assessments	94
Ravens Coloured Progressive Matrices (CPM)	Clinical Assessments	134
Social Communication Questionnaire (SCQ) - Lifetime	Clinical Assessments	124
Social Responsiveness Scale (SRS)	Clinical Assessments	184
Social Responsiveness Scale (SRS) - Adult/Self Version	Clinical Assessments	46
Vineland-II - Parent and Caregiver Rating Form (2005)	Clinical Assessments	112
Wechsler Abbreviated Scale of Intelligence (WASI)	Clinical Assessments	554
Wechsler Adult Intelligence Scale III	Clinical Assessments	66
Wechsler Intelligence Scale for Children III	Clinical Assessments	49

helpcenter.collection.shared-data-tab

Collection - Shared Data

This tab provides a quick overview of the Data Structure title, Data Type, and Number of Subjects that are currently Shared for the Collection. The information presented in this tab is automatically generated by NDA and cannot be edited. If no information is visible on this tab, this would indicate the Collection does not have shared data or the data is private.

The shared data is available to other researchers who have permission to access data in the Collection's designated Permission Group(s). Use the Download button to get all shared data from the Collection to the Filter Cart.

Frequently Asked Questions

How will I know if another researcher uses data that I shared through the NIMH Data Archive (NDA)?

To see what data your project have submitted are being used by a study, simply go the Associated Studies tab of your collection. Alternatively, you may review an NDA Study Attribution Report available on the General tab.
Can I get a supplement to share data from a completed research project?

Often it becomes more difficult to organize and format data electronically after the project has been completed and the information needed to create a GUID may not be available; however, you may still contact a program staff member at the appropriate funding institution for more information.
Can I get a supplement to share data from a research project that is still ongoing?

Unlike completed projects where researchers may not have the information needed to create a GUID and/or where the effort needed to organize and format data becomes prohibitive, ongoing projects have more of an opportunity to overcome these challenges. Please contact a program staff member at the appropriate funding institution for more information.

Glossary

Data Structure

A defined organization and group of Data Elements to represent an electronic definition of a measure, assessment, questionnaire, or collection of data points. Data structures that have been defined in the NDA Data Dictionary are available at https://nda.nih.gov/general-query.html?q=query=data-structure
Data Type

A grouping of data by similar characteristics such as Clinical Assessments, Omics, or Neurosignal data.
Shared

The term 'Shared' generally means available to others; however, there are some slightly different meanings based on what is Shared. A Shared NDA Study is viewable and searchable publicly regardless of the user's role or whether the user has an NDA account. A Shared NDA Study does not necessarily mean that data used in the NDA Study have been shared as this is independently determined. Data are shared according the schedule defined in a Collection's Data Expected Tab and/or in accordance with data sharing expectations in the NDA Data Sharing Terms and Conditions. Additionally, Supporting Documentation uploaded to a Collection may be shared independent of whether data are shared.

Contact NDA Help Desk

Collection Owners and those with Collection Administrator permission, may edit a collection. The following is currently available for Edit on this page:

Publications

Publications relevant to NDA data are listed below. Most displayed publications have been associated with the grant within Pubmed. Use the "+ New Publication" button to add new publications. Publications relevant/not relevant to data expected are categorized. Relevant publications are then linked to the underlying data by selecting the Create Study link. Study provides the ability to define cohorts, assign subjects, define outcome measures and lists the study type, data analysis and results. Analyzed data and results are expected in this way.

PubMed ID	Study	Title	Journal	Authors	Date	Status
38375968	Create Study	Deep learning-based BMI inference from structural brain MRI reflects brain alterations following lifestyle intervention.	Human brain mapping	Finkelstein, Ofek; Levakov, Gidon; Kaplan, Alon; Zelicha, Hila; Meir, Anat Yaskolka; Rinott, Ehud; Tsaban, Gal; Witte, Anja Veronica; Blüher, Matthias; Stumvoll, Michael; Shelef, Ilan; Shai, Iris; Riklin Raviv, Tammy; Avidan, Galia	February 15, 2024	Not Determined
38294531	Create Study	Local gradient analysis of human brain function using the Vogt-Bailey Index.	Brain structure & function	Farrugia, Christine; Galdi, Paola; Irazu, Irati Arenzana; Scerri, Kenneth; Bajada, Claude J	March 1, 2024	Not Determined
37787573	Create Study	Identifying canonical and replicable multi-scale intrinsic connectivity networks in 100k+ resting-state fMRI datasets.	Human brain mapping	Iraji, A; Fu, Z; Faghiri, A; Duda, M; Chen, J; Rachakonda, S; DeRamus, T; Kochunov, P; Adhikari, B M; Belger, A; Ford, J M; Mathalon, D H; Pearlson, G D; Potkin, S G; Preda, A; Turner, J A; van Erp, T G M; Bustillo, J R; Yang, K; Ishizuka, K; Faria, A; Sawa, A; Hutchison, K; Osuch, E A; Theberge, J; Abbott, C; Mueller, B A; Zhi, D; Zhuo, C; Liu, S; Xu, Y; Salman, M; Liu, J; Du, Y; Sui, J; Adali, T; Calhoun, V D	December 1, 2023	Not Determined
37745373	Create Study	Functional connectome through the human life span.	bioRxiv : the preprint server for biology	Sun, Lianglong; Zhao, Tengda; Liang, Xinyuan; Xia, Mingrui; Li, Qiongling; Liao, Xuhong; Gong, Gaolang; Wang, Qian; Pang, Chenxuan; Yu, Qian; Bi, Yanchao; Chen, Pindong; Chen, Rui; Chen, Yuan; Chen, Taolin; Cheng, Jingliang; Cheng, Yuqi; Cui, Zaixu; Dai, Zhengjia; Deng, Yao; Ding, Yuyin; Dong, Qi; Duan, Dingna; Gao, Jia-Hong; Gong, Qiyong; Han, Ying; Han, Zaizhu; Huang, Chu-Chung; Huang, Ruiwang; Huo, Ran; Li, Lingjiang; Lin, Ching-Po; Lin, Qixiang; Liu, Bangshan; Liu, Chao; Liu, Ningyu; Liu, Ying; Liu, Yong; Lu, Jing; Ma, Leilei; Men, Weiwei; Qin, Shaozheng; Qiu, Jiang; Qiu, Shijun; Si, Tianmei; Tan, Shuping; Tang, Yanqing; Tao, Sha; Wang, Dawei; Wang, Fei; Wang, Jiali; Wang, Pan; Wang, Xiaoqin; Wang, Yanpei; Wei, Dongtao; Wu, Yankun; Xie, Peng; Xu, Xiufeng; Xu, Yuehua; Xu, Zhilei; Yang, Liyuan; Yuan, Huishu; Zeng, Zilong; Zhang, Haibo; Zhang, Xi; Zhao, Gai; Zheng, Yanting; Zhong, Suyu; Alzheimer’s Disease Neuroimaging Initiative, Cam-CAN, Developing Human Connectome Project, DIDA-MDD Working Group, MCADI, NSPN; He, Yong	September 19, 2023	Not Determined
37730747	Create Study	Predicting ''Brainage'' in late childhood to adolescence (6-17yrs) using structural MRI, morphometric similarity, and machine learning.	Scientific reports	Griffiths-King, Daniel; Wood, Amanda G; Novak, Jan	September 20, 2023	Not Determined
37685311	Create Study	Evaluation of Augmentation Methods in Classifying Autism Spectrum Disorders from fMRI Data with 3D Convolutional Neural Networks.	Diagnostics (Basel, Switzerland)	Jönemo, Johan; Abramian, David; Eklund, Anders	August 27, 2023	Not Determined
37516374	Create Study	Systematic cortical thickness and curvature patterns in primates.	NeuroImage	Demirci, Nagehan; Hoffman, Mia E; Holland, Maria A	September 1, 2023	Not Determined
37292656	Create Study	Generalizable neuromarker for autism spectrum disorder across imaging sites and developmental stages: A multi-site study.	Research square	Itahashi, Takashi; Yamashita, Ayumu; Takahara, Yuji; Yahata, Noriaki; Aoki, Yuta Y; Fujino, Junya; Yoshihara, Yujiro; Nakamura, Motoaki; Aoki, Ryuta; Ohta, Haruhisa; Sakai, Yuki; Takamura, Masahiro; Ichikawa, Naho; Okada, Go; Okada, Naohiro; Kasai, Kiyoto; Tanaka, Saori C; Imamizu, Hiroshi; Kato, Nobumasa; Okamoto, Yasumasa; Takahashi, Hidehiko; Kawato, Mitsuo; Yamashita, Okito; Hashimoto, Ryu-Ichiro	May 15, 2023	Not Determined
37214863	Create Study	Extensive T1-weighted MRI Preprocessing Improves Generalizability of Deep Brain Age Prediction Models.	bioRxiv : the preprint server for biology	Dular, Lara; Pernuš, Franjo; Špiclin, Žiga	October 30, 2023	Not Determined
36909598	Create Study	Predicting ''Brainage'' in the Developmental Period using Structural MRI, Morphometric Similarity, and Machine Learning.	Research square	Griffiths-King, Daniel J; Wood, Amanda G; Novak, Jan	February 28, 2023	Not Determined
36356823	Create Study	Through the looking glass: Deep interpretable dynamic directed connectivity in resting fMRI.	NeuroImage	Mahmood, Usman; Fu, Zening; Ghosh, Satrajit; Calhoun, Vince; Plis, Sergey	December 1, 2022	Not Determined
35864279	Create Study	Interpreting models interpreting brain dynamics.	Scientific reports	Rahman, Md Mahfuzur; Mahmood, Usman; Lewis, Noah; Gazula, Harshvardhan; Fedorov, Alex; Fu, Zening; Calhoun, Vince D; Plis, Sergey M	July 21, 2022	Not Determined
35388950	Create Study	Hippocampal-amygdalo-ventricular atrophy score: Alzheimer disease detection using normative and pathological lifespan models.	Human brain mapping	Coupé, Pierrick; Manjón, José V; Mansencal, Boris; Tourdias, Thomas; Catheline, Gwenaëlle; Planche, Vincent	July 1, 2022	Not Determined
35243723	Create Study	Privacy-preserving quality control of neuroimaging datasets in federated environments.	Human brain mapping	Saha, Debbrata K; Calhoun, Vince D; Du, Yuhui; Fu, Zening; Kwon, Soo Min; Sarwate, Anand D; Panta, Sandeep R; Plis, Sergey M	May 1, 2022	Not Determined
34873110	Create Study	Disrupted functional connectivity between the nucleus accumbens and posterior cingulate cortex in autism spectrum disorder.	Neuroreport	Polk, MaryScott; Ikuta, Toshikazu	January 19, 2022	Not Determined
34489757	Create Study	Atypical Integration of Sensory-to-Transmodal Functional Systems Mediates Symptom Severity in Autism.	Frontiers in psychiatry	Park, Shinwon; Haak, Koen V; Cho, Han Byul; Valk, Sofie L; Bethlehem, Richard A I; Milham, Michael P; Bernhardt, Boris C; Di Martino, Adriana; Hong, Seok-Jun	January 1, 2021	Not Determined
34424949	Create Study	Atypical Intrinsic Hemispheric Interaction Associated with Autism Spectrum Disorder Is Present within the First Year of Life.	Cerebral cortex (New York, N.Y. : 1991)	Rolison, Max; Lacadie, Cheryl; Chawarska, Katarzyna; Spann, Marisa; Scheinost, Dustin	March 4, 2022	Not Determined
34008924	Create Study	Testing the extreme male brain hypothesis: Is autism spectrum disorder associated with a more male-typical brain?	Autism research : official journal of the International Society for Autism Research	van Eijk, Liza; Zietsch, Brendan P	August 1, 2021	Not Determined
33989150	Create Study	Functional Connectivity-Based Prediction of Autism on Site Harmonized ABIDE Dataset.	IEEE transactions on bio-medical engineering	Ingalhalikar, Madhura; Shinde, Sumeet; Karmarkar, Arnav; Rajan, Archith; Rangaprakash, D; Deshpande, Gopikrishna	December 1, 2021	Not Determined
33385551	Create Study	Deep learning-based unlearning of dataset bias for MRI harmonisation and confound removal.	NeuroImage	Dinsdale, Nicola K; Jenkinson, Mark; Namburete, Ana I L	March 1, 2021	Not Determined
33381612	Create Study	Generalizing deep whole-brain segmentation for post-contrast MRI with transfer learning.	Journal of medical imaging (Bellingham, Wash.)	Bermudez, Camilo; Remedios, Samuel W; Ramadass, Karthik; McHugo, Maureen; Heckers, Stephan; Huo, Yuankai; Landman, Bennett A	November 1, 2020	Not Determined
33077750	Create Study	Mutations associated with neuropsychiatric conditions delineate functional brain connectivity dimensions contributing to autism and schizophrenia.	Nature communications	Moreau, Clara A; Urchs, Sebastian G W; Kuldeep, Kumar; Orban, Pierre; Schramm, Catherine; Dumas, Guillaume; Labbe, Aurélie; Huguet, Guillaume; Douard, Elise; Quirion, Pierre-Olivier; Lin, Amy; Kushan, Leila; Grot, Stephanie; Luck, David; Mendrek, Adrianna; Potvin, Stephane; Stip, Emmanuel; Bourgeron, Thomas; Evans, Alan C; Bearden, Carrie E; Bellec, Pierre; Jacquemont, Sebastien	October 19, 2020	Not Determined
32735601	Create Study	Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps.	PloS one	Schilling, Kurt G; Blaber, Justin; Hansen, Colin; Cai, Leon; Rogers, Baxter; Anderson, Adam W; Smith, Seth; Kanakaraj, Praitayini; Rex, Tonia; Resnick, Susan M; Shafer, Andrea T; Cutting, Laurie E; Woodward, Neil; Zald, David; Landman, Bennett A	January 1, 2020	Not Determined
32632150	Create Study	Atypical age-related changes in cortical thickness in autism spectrum disorder.	Scientific reports	Nunes, Adonay S; Vakorin, Vasily A; Kozhemiako, Nataliia; Peatfield, Nicholas; Ribary, Urs; Doesburg, Sam M	July 6, 2020	Not Determined
32539527	Create Study	Subcortical Brain Volume, Regional Cortical Thickness, and Cortical Surface Area Across Disorders: Findings From the ENIGMA ADHD, ASD, and OCD Working Groups.	The American journal of psychiatry	Boedhoe, Premika S W; van Rooij, Daan; Hoogman, Martine; Twisk, Jos W R; Schmaal, Lianne; Abe, Yoshinari; Alonso, Pino; Ameis, Stephanie H; Anikin, Anatoly; Anticevic, Alan; Arango, Celso; Arnold, Paul D; Asherson, Philip; Assogna, Francesca; Auzias, Guillaume; Banaschewski, Tobias; Baranov, Alexander; Batistuzzo, Marcelo C; Baumeister, Sarah; Baur-Streubel, Ramona; Behrmann, Marlene; Bellgrove, Mark A; Benedetti, Francesco; Beucke, Jan C; Biederman, Joseph; Bollettini, Irene; Bose, Anushree; Bralten, Janita; Bramati, Ivanei E; Brandeis, Daniel; Brem, Silvia; Brennan, Brian P; Busatto, Geraldo F; Calderoni, Sara; Calvo, Anna; Calvo, Rosa; Castellanos, Francisco X; Cercignani, Mara; Chaim-Avancini, Tiffany M; Chantiluke, Kaylita C; Cheng, Yuqi; Cho, Kang Ik K; Christakou, Anastasia; Coghill, David; Conzelmann, Annette; Cubillo, Ana I; Dale, Anders M; Dallaspezia, Sara; Daly, Eileen; Denys, Damiaan; Deruelle, Christine; Di Martino, Adriana; Dinstein, Ilan; Doyle, Alysa E; Durston, Sarah; Earl, Eric A; Ecker, Christine; Ehrlich, Stefan; Ely, Benjamin A; Epstein, Jeffrey N; Ethofer, Thomas; Fair, Damien A; Fallgatter, Andreas J; Faraone, Stephen V; Fedor, Jennifer; Feng, Xin; Feusner, Jamie D; Fitzgerald, Jackie; Fitzgerald, Kate D; Fouche, Jean-Paul; Freitag, Christine M; Fridgeirsson, Egill A; Frodl, Thomas; Gabel, Matt C; Gallagher, Louise; Gogberashvili, Tinatin; Gori, Ilaria; Gruner, Patricia; Gürsel, Deniz A; Haar, Shlomi; Haavik, Jan; Hall, Geoffrey B; Harrison, Neil A; Hartman, Catharina A; Heslenfeld, Dirk J; Hirano, Yoshiyuki; Hoekstra, Pieter J; Hoexter, Marcelo Q; Hohmann, Sarah; Høvik, Marie F; Hu, Hao; Huyser, Chaim; Jahanshad, Neda; Jalbrzikowski, Maria; James, Anthony; Janssen, Joost; Jaspers-Fayer, Fern; Jernigan, Terry L; Kapilushniy, Dmitry; Kardatzki, Bernd; Karkashadze, Georgii; Kathmann, Norbert; Kaufmann, Christian; Kelly, Clare; Khadka, Sabin; King, Joseph A; Koch, Kathrin; Kohls, Gregor; Konrad, Kerstin; Kuno, Masaru; Kuntsi, Jonna; Kvale, Gerd; Kwon, Jun Soo; Lázaro, Luisa; Lera-Miguel, Sara; Lesch, Klaus-Peter; Hoekstra, Liesbeth; Liu, Yanni; Lochner, Christine; Louza, Mario R; Luna, Beatriz; Lundervold, Astri J; Malpas, Charles B; Marques, Paulo; Marsh, Rachel; Martínez-Zalacaín, Ignacio; Mataix-Cols, David; Mattos, Paulo; McCarthy, Hazel; McGrath, Jane; Mehta, Mitul A; Menchón, José M; Mennes, Maarten; Martinho, Mauricio Moller; Moreira, Pedro S; Morer, Astrid; Morgado, Pedro; Muratori, Filippo; Murphy, Clodagh M; Murphy, Declan G M; Nakagawa, Akiko; Nakamae, Takashi; Nakao, Tomohiro; Namazova-Baranova, Leyla; Narayanaswamy, Janardhanan C; Nicolau, Rosa; Nigg, Joel T; Novotny, Stephanie E; Nurmi, Erika L; Weiss, Eileen Oberwelland; O'Gorman Tuura, Ruth L; O'Hearn, Kirsten; O'Neill, Joseph; Oosterlaan, Jaap; Oranje, Bob; Paloyelis, Yannis; Parellada, Mara; Pauli, Paul; Perriello, Chris; Piacentini, John; Piras, Fabrizio; Piras, Federica; Plessen, Kerstin J; Puig, Olga; Ramos-Quiroga, J Antoni; Reddy, Y C Janardhan; Reif, Andreas; Reneman, Liesbeth; Retico, Alessandra; Rosa, Pedro G P; Rubia, Katya; Rus, Oana Georgiana; Sakai, Yuki; Schrantee, Anouk; Schwarz, Lena; Schweren, Lizanne J S; Seitz, Jochen; Shaw, Philip; Shook, Devon; Silk, Tim J; Simpson, H Blair; Skokauskas, Norbert; Soliva Vila, Juan Carlos; Solovieva, Anastasia; Soreni, Noam; Soriano-Mas, Carles; Spalletta, Gianfranco; Stern, Emily R; Stevens, Michael C; Stewart, S Evelyn; Sudre, Gustavo; Szeszko, Philip R; Tamm, Leanne; Taylor, Margot J; Tolin, David F; Tosetti, Michela; Tovar-Moll, Fernanda; Tsuchiyagaito, Aki; van Erp, Theo G M; van Wingen, Gu (see original citation for additional authors)	September 1, 2020	Not Determined
32522665	Create Study	AssemblyNet: A large ensemble of CNNs for 3D whole brain MRI segmentation.	NeuroImage	Coupé, Pierrick; Mansencal, Boris; Clément, Michaël; Giraud, Rémi; Denis de Senneville, Baudouin; Ta, Vinh-Thong; Lepetit, Vincent; Manjon, José V	October 1, 2020	Not Determined
32320123	Create Study	From a deep learning model back to the brain-Identifying regional predictors and their relation to aging.	Human brain mapping	Levakov, Gidon; Rosenthal, Gideon; Shelef, Ilan; Raviv, Tammy Riklin; Avidan, Galia	August 2020	Not Determined
32124254	Create Study	Functional connectivity of the anterior insula associated with intolerance of uncertainty in youth.	Cognitive, affective & behavioral neuroscience	DeSerisy, Mariah; Musial, Alec; Comer, Jonathan S; Roy, Amy K	June 2020	Not Determined
32062083	Create Study	Optimising network modelling methods for fMRI.	NeuroImage	Pervaiz, Usama; Vidaurre, Diego; Woolrich, Mark W; Smith, Stephen M	May 2020	Not Determined
31916675	Create Study	Nonreplication of functional connectivity differences in autism spectrum disorder across multiple sites and denoising strategies.	Human brain mapping	He, Ye; Byrge, Lisa; Kennedy, Daniel P	April 2020	Not Determined
31691160	Create Study	Supervised machine learning for diagnostic classification from large-scale neuroimaging datasets.	Brain imaging and behavior	Lanka, Pradyumna; Rangaprakash, D; Dretsch, Michael N; Katz, Jeffrey S; Denney Jr, Thomas S; Deshpande, Gopikrishna	December 1, 2020	Not Determined
31247249	Create Study	Anatomical context improves deep learning on the brain age estimation task.	Magnetic resonance imaging	Bermudez, Camilo; Plassard, Andrew J; Chaganti, Shikha; Huo, Yuankai; Aboud, Katherine S; Cutting, Laurie E; Resnick, Susan M; Landman, Bennett A	October 2019	Not Determined
31096134	Create Study	An algorithm for learning shape and appearance models without annotations.	Medical image analysis	Ashburner, John; Brudfors, Mikael; Bronik, Kevin; Balbastre, Yaël	July 2019	Not Determined
31014101	Create Study	Brain Imaging of the Cortex in ADHD: A Coordinated Analysis of Large-Scale Clinical and Population-Based Samples.	The American journal of psychiatry	Hoogman, Martine; Muetzel, Ryan; Guimaraes, Joao P; Shumskaya, Elena; Mennes, Maarten; Zwiers, Marcel P; Jahanshad, Neda; Sudre, Gustavo; Wolfers, Thomas; Earl, Eric A; Soliva Vila, Juan Carlos; Vives-Gilabert, Yolanda; Khadka, Sabin; Novotny, Stephanie E; Hartman, Catharina A; Heslenfeld, Dirk J; Schweren, Lizanne J S; Ambrosino, Sara; Oranje, Bob; de Zeeuw, Patrick; Chaim-Avancini, Tiffany M; Rosa, Pedro G P; Zanetti, Marcus V; Malpas, Charles B; Kohls, Gregor; von Polier, Georg G; Seitz, Jochen; Biederman, Joseph; Doyle, Alysa E; Dale, Anders M; van Erp, Theo G M; Epstein, Jeffery N; Jernigan, Terry L; Baur-Streubel, Ramona; Ziegler, Georg C; Zierhut, Kathrin C; Schrantee, Anouk; Høvik, Marie F; Lundervold, Astri J; Kelly, Clare; McCarthy, Hazel; Skokauskas, Norbert; O'Gorman Tuura, Ruth L; Calvo, Anna; Lera-Miguel, Sara; Nicolau, Rosa; Chantiluke, Kaylita C; Christakou, Anastasia; Vance, Alasdair; Cercignani, Mara; Gabel, Matt C; Asherson, Philip; Baumeister, Sarah; Brandeis, Daniel; Hohmann, Sarah; Bramati, Ivanei E; Tovar-Moll, Fernanda; Fallgatter, Andreas J; Kardatzki, Bernd; Schwarz, Lena; Anikin, Anatoly; Baranov, Alexandr; Gogberashvili, Tinatin; Kapilushniy, Dmitry; Solovieva, Anastasia; El Marroun, Hanan; White, Tonya; Karkashadze, Georgii; Namazova-Baranova, Leyla; Ethofer, Thomas; Mattos, Paulo; Banaschewski, Tobias; Coghill, David; Plessen, Kerstin J; Kuntsi, Jonna; Mehta, Mitul A; Paloyelis, Yannis; Harrison, Neil A; Bellgrove, Mark A; Silk, Tim J; Cubillo, Ana I; Rubia, Katya; Lazaro, Luisa; Brem, Silvia; Walitza, Susanne; Frodl, Thomas; Zentis, Mariam; Castellanos, Francisco X; Yoncheva, Yuliya N; Haavik, Jan; Reneman, Liesbeth; Conzelmann, Annette; Lesch, Klaus-Peter; Pauli, Paul; Reif, Andreas; Tamm, Leanne; Konrad, Kerstin; Oberwelland Weiss, Eileen; Busatto, Geraldo F; Louza, Mario R; Durston, Sarah; Hoekstra, Pieter J; Oosterlaan, Jaap; Stevens, Michael C; Ramos-Quiroga, J Antoni; Vilarroya, Oscar; Fair, Damien A; Nigg, Joel T; Thompson, Paul M; Buitelaar, Jan K; Faraone, Stephen V; Shaw, Philip; Tiemeier, Henning; Bralten, Janita; Franke, Barbara	July 2019	Not Determined
31010580	Create Study	The Functional Brain Organization of an Individual Allows Prediction of Measures of Social Abilities Transdiagnostically in Autism and Attention-Deficit/Hyperactivity Disorder.	Biological psychiatry	Lake, Evelyn M R; Finn, Emily S; Noble, Stephanie M; Vanderwal, Tamara; Shen, Xilin; Rosenberg, Monica D; Spann, Marisa N; Chun, Marvin M; Scheinost, Dustin; Constable, R Todd	August 2019	Not Determined
30850617	Create Study	Lifespan Changes of the Human Brain In Alzheimer's Disease.	Scientific reports	Coupé P, Manjón JV, Lanuza E, Catheline G	March 2019	Not Determined
30833582	Create Study	Atypical functional connectome hierarchy in autism.	Nature communications	Hong, Seok-Jun; Vos de Wael, Reinder; Bethlehem, Richard A I; Lariviere, Sara; Paquola, Casey; Valk, Sofie L; Milham, Michael P; Di Martino, Adriana; Margulies, Daniel S; Smallwood, Jonathan; Bernhardt, Boris C	March 2019	Not Determined
30814340	Create Study	Patients with autism spectrum disorders display reproducible functional connectivity alterations.	Science translational medicine	Holiga, Štefan; Hipp, Joerg F; Chatham, Christopher H; Garces, Pilar; Spooren, Will; D'Ardhuy, Xavier Liogier; Bertolino, Alessandro; Bouquet, Céline; Buitelaar, Jan K; Bours, Carsten; Rausch, Annika; Oldehinkel, Marianne; Bouvard, Manuel; Amestoy, Anouck; Caralp, Mireille; Gueguen, Sonia; Ly-Le Moal, Myriam; Houenou, Josselin; Beckmann, Christian F; Loth, Eva; Murphy, Declan; Charman, Tony; Tillmann, Julian; Laidi, Charles; Delorme, Richard; Beggiato, Anita; Gaman, Alexandru; Scheid, Isabelle; Leboyer, Marion; d'Albis, Marc-Antoine; Sevigny, Jeff; Czech, Christian; Bolognani, Federico; Honey, Garry D; Dukart, Juergen	February 2019	Not Determined
30686984	Create Study	Topological Properties of Resting-State fMRI Functional Networks Improve Machine Learning-Based Autism Classification.	Frontiers in neuroscience	Kazeminejad, Amirali; Sotero, Roberto C	January 2018	Not Determined
30569528	Create Study	Neuroanatomical deficits shared by youth with autism spectrum disorders and psychotic disorders.	Human brain mapping	Díaz-Caneja, Covadonga M; Schnack, Hugo; Martínez, Kenia; Santonja, Javier; Alemán-Gomez, Yasser; Pina-Camacho, Laura; Moreno, Carmen; Fraguas, David; Arango, Celso; Parellada, Mara; Janssen, Joost	April 2019	Not Determined
30566613	Create Study	The Superficial White Matter in Autism and Its Role in Connectivity Anomalies and Symptom Severity.	Cerebral cortex (New York, N.Y. : 1991)	Hong, Seok-Jun; Hyung, Brian; Paquola, Casey; Bernhardt, Boris C	September 2019	Not Determined
30393630	Create Study	Investigating the Correspondence of Clinical Diagnostic Grouping With Underlying Neurobiological and Phenotypic Clusters Using Unsupervised Machine Learning.	Frontiers in applied mathematics and statistics	Zhao, Xinyu; Rangaprakash, D; Yuan, Bowen; Denney Jr, Thomas S; Katz, Jeffrey S; Dretsch, Michael N; Deshpande, Gopikrishna	September 2018	Not Determined
30357998	Create Study	Enhancing the representation of functional connectivity networks by fusing multi-view information for autism spectrum disorder diagnosis.	Human brain mapping	Huang H, Liu X, Jin Y, Lee SW, Wee CY, Shen D	February 2019	Not Determined
30047295	Create Study	Is Increased Response Time Variability Related to Deficient Emotional Self-Regulation in Children With ADHD?	Journal of attention disorders	Elmaghrabi, Shereen; Nahmias, Maria Julia; Adamo, Nicoletta; Di Martino, Adriana; Somandepalli, Krishna; Patel, Varun; McLaughlin, Andrea; De Sanctis, Virginia; Castellanos, Francisco X	May 1, 2020	Not Determined
29703592	Create Study	Personalized Intrinsic Network Topography Mapping and Functional Connectivity Deficits in Autism Spectrum Disorder.	Biological psychiatry	Dickie, Erin W; Ameis, Stephanie H; Shahab, Saba; Calarco, Navona; Smith, Dawn E; Miranda, Dayton; Viviano, Joseph D; Voineskos, Aristotle N	August 2018	Not Determined
28968847	Create Study	Multidimensional Neuroanatomical Subtyping of Autism Spectrum Disorder.	Cerebral cortex (New York, N.Y. : 1991)	Hong SJ, Valk SL, Di Martino A, Milham MP, Bernhardt BC	October 2018	Not Determined
28941213	Create Study	Adaptive behavior in autism: Minimal clinically important differences on the Vineland-II.	Autism research : official journal of the International Society for Autism Research	Chatham, C H; Taylor, K I; Charman, T; Liogier D'ardhuy, X; Eule, E; Fedele, A; Hardan, A Y; Loth, E; Murtagh, L; Del Valle Rubido, M; San Jose Caceres, A; Sevigny, J; Sikich, L; Snyder, L; Tillmann, J E; Ventola, P E; Walton-Bowen, K L; Wang, P P; Willgoss, T; Bolognani, F	February 2018	Not Determined
28877317	Create Study	Association of White Matter Structure With Autism Spectrum Disorder and Attention-Deficit/Hyperactivity Disorder.	JAMA psychiatry	Aoki, Yuta; Yoncheva, Yuliya N; Chen, Bosi; Nath, Tanmay; Sharp, Dillon; Lazar, Mariana; Velasco, Pablo; Milham, Michael P; Di Martino, Adriana	November 2017	Not Determined
28737295	Create Study	Towards a unified analysis of brain maturation and aging across the entire lifespan: A MRI analysis.	Human brain mapping	Coupé, Pierrick; Catheline, Gwenaelle; Lanuza, Enrique; Manjón, José Vicente; Alzheimer's Disease Neuroimaging Initiative	November 2017	Not Determined
28512057	Create Study	Normative morphometric data for cerebral cortical areas over the lifetime of the adult human brain.	NeuroImage	Potvin, Olivier; Dieumegarde, Louis; Duchesne, Simon; Alzheimer's Disease Neuroimaging Initiative	August 2017	Not Determined
28506079	Create Study	The Neural Correlates of Emotional Lability in Children with Autism Spectrum Disorder.	Brain connectivity	Bennett, Randi H; Somandepalli, Krishna; Roy, Amy K; Di Martino, Adriana	June 2017	Not Determined
28479474	Create Study	Freesurfer cortical normative data for adults using Desikan-Killiany-Tourville and ex vivo protocols.	NeuroImage	Potvin O, Dieumegarde L, Duchesne S,	August 2017	Not Determined
28291247	Create Study	Enhancing studies of the connectome in autism using the autism brain imaging data exchange II.	Scientific data	Di Martino, Adriana; O'Connor, David; Chen, Bosi; Alaerts, Kaat; Anderson, Jeffrey S; Assaf, Michal; Balsters, Joshua H; Baxter, Leslie; Beggiato, Anita; Bernaerts, Sylvie; Blanken, Laura M E; Bookheimer, Susan Y; Braden, B Blair; Byrge, Lisa; Castellanos, F Xavier; Dapretto, Mirella; Delorme, Richard; Fair, Damien A; Fishman, Inna; Fitzgerald, Jacqueline; Gallagher, Louise; Keehn, R Joanne Jao; Kennedy, Daniel P; Lainhart, Janet E; Luna, Beatriz; Mostofsky, Stewart H; Müller, Ralph-Axel; Nebel, Mary Beth; Nigg, Joel T; O'Hearn, Kirsten; Solomon, Marjorie; Toro, Roberto; Vaidya, Chandan J; Wenderoth, Nicole; White, Tonya; Craddock, R Cameron; Lord, Catherine; Leventhal, Bennett; Milham, Michael P	March 2017	Not Relevant
28219628	Create Study	Subcortical brain volume differences in participants with attention deficit hyperactivity disorder in children and adults: a cross-sectional mega-analysis.	The lancet. Psychiatry	Hoogman, Martine; Bralten, Janita; Hibar, Derrek P; Mennes, Maarten; Zwiers, Marcel P; Schweren, Lizanne S J; van Hulzen, Kimm J E; Medland, Sarah E; Shumskaya, Elena; Jahanshad, Neda; Zeeuw, Patrick de; Szekely, Eszter; Sudre, Gustavo; Wolfers, Thomas; Onnink, Alberdingk M H; Dammers, Janneke T; Mostert, Jeanette C; Vives-Gilabert, Yolanda; Kohls, Gregor; Oberwelland, Eileen; Seitz, Jochen; Schulte-Rüther, Martin; Ambrosino, Sara; Doyle, Alysa E; Høvik, Marie F; Dramsdahl, Margaretha; Tamm, Leanne; van Erp, Theo G M; Dale, Anders; Schork, Andrew; Conzelmann, Annette; Zierhut, Kathrin; Baur, Ramona; McCarthy, Hazel; Yoncheva, Yuliya N; Cubillo, Ana; Chantiluke, Kaylita; Mehta, Mitul A; Paloyelis, Yannis; Hohmann, Sarah; Baumeister, Sarah; Bramati, Ivanei; Mattos, Paulo; Tovar-Moll, Fernanda; Douglas, Pamela; Banaschewski, Tobias; Brandeis, Daniel; Kuntsi, Jonna; Asherson, Philip; Rubia, Katya; Kelly, Clare; Martino, Adriana Di; Milham, Michael P; Castellanos, Francisco X; Frodl, Thomas; Zentis, Mariam; Lesch, Klaus-Peter; Reif, Andreas; Pauli, Paul; Jernigan, Terry L; Haavik, Jan; Plessen, Kerstin J; Lundervold, Astri J; Hugdahl, Kenneth; Seidman, Larry J; Biederman, Joseph; Rommelse, Nanda; Heslenfeld, Dirk J; Hartman, Catharina A; Hoekstra, Pieter J; Oosterlaan, Jaap; Polier, Georg von; Konrad, Kerstin; Vilarroya, Oscar; Ramos-Quiroga, Josep Antoni; Soliva, Joan Carles; Durston, Sarah; Buitelaar, Jan K; Faraone, Stephen V; Shaw, Philip; Thompson, Paul M; Franke, Barbara	April 2017	Not Determined
27585835	Create Study	Identifying differences in brain activities and an accurate detection of autism spectrum disorder using resting state functional-magnetic resonance imaging : A spatial filtering approach.	Medical image analysis	Subbaraju V, Suresh MB, Sundaram S, Narasimhan S	January 2017	Not Determined
26693400	Create Study	Periventricular white matter abnormalities and restricted repetitive behavior in autism spectrum disorder.	NeuroImage. Clinical	Blackmon, Karen; Ben-Avi, Emma; Wang, Xiuyuan; Pardoe, Heath R; Di Martino, Adriana; Halgren, Eric; Devinsky, Orrin; Thesen, Thomas; Kuzniecky, Ruben	January 2016	Not Determined
26365788	Create Study	Short-term test-retest reliability of resting state fMRI metrics in children with and without attention-deficit/hyperactivity disorder.	Developmental cognitive neuroscience	Somandepalli, Krishna; Kelly, Clare; Reiss, Philip T; Zuo, Xi-Nian; Craddock, R C; Yan, Chao-Gan; Petkova, Eva; Castellanos, F X; Milham, Michael P; Di Martino, Adriana	October 2015	Not Determined
26210336	Create Study	Reduced Gyrification Is Related to Reduced Interhemispheric Connectivity in Autism Spectrum Disorders.	Journal of the American Academy of Child and Adolescent Psychiatry	Bos DJ, Merchán-Naranjo J, Martínez K, Pina-Camacho L, Balsa I, Boada L, Schnack H, Oranje B, Desco M, Arango C, Parellada M, Durston S, Janssen J	August 2015	Not Determined
26146534	Create Study	Sex differences in cortical volume and gyrification in autism.	Molecular autism	Schaer M, Kochalka J, Padmanabhan A, Supekar K, Menon V	January 2015	Not Determined
26058882	Create Study	Local brain connectivity across development in autism spectrum disorder: A cross-sectional investigation.	Autism research : official journal of the International Society for Autism Research	Dajani, Dina R; Uddin, Lucina Q	January 2016	Not Determined
25951196	Create Study	Variation in functional connectivity along anterior-to-posterior intraparietal sulcus, and relationship with age across late childhood and adolescence.	Developmental cognitive neuroscience	Vinette, Sarah A; Bray, Signe	June 2015	Not Determined
25809403	Create Study	Age-related changes in intrinsic function of the superior temporal sulcus in autism spectrum disorders.	Social cognitive and affective neuroscience	Alaerts, Kaat; Nayar, Kritika; Kelly, Clare; Raithel, Jessica; Milham, Michael P; Di Martino, Adriana	October 2015	Not Determined
25727858	Create Study	Multicenter mapping of structural network alterations in autism.	Human brain mapping	Valk, Sofie L; Di Martino, Adriana; Milham, Michael P; Bernhardt, Boris C	June 2015	Not Determined
24583255	Create Study	A multivariate distance-based analytic framework for connectome-wide association studies.	NeuroImage	Shehzad, Zarrar; Kelly, Clare; Reiss, Philip T; Cameron Craddock, R; Emerson, John W; McMahon, Katie; Copland, David A; Castellanos, F Xavier; Milham, Michael P	June 2014	Not Determined
24565362	Create Study	Abnormal amygdala functional connectivity associated with emotional lability in children with attention-deficit/hyperactivity disorder.	Journal of the American Academy of Child and Adolescent Psychiatry	Hulvershorn LA, Mennes M, Castellanos FX, Di Martino A, Milham MP, Hummer TA, Roy AK	March 2014	Not Determined
24560717	Create Study	Common intrinsic connectivity states among posteromedial cortex subdivisions: Insights from analysis of temporal dynamics.	NeuroImage	Yang, Zhen; Craddock, R Cameron; Margulies, Daniel S; Yan, Chao-Gan; Milham, Michael P	June 2014	Not Determined
24078018	Create Study	Underconnectivity of the superior temporal sulcus predicts emotion recognition deficits in autism.	Social cognitive and affective neuroscience	Alaerts K, Woolley DG, Steyaert J, Di Martino A, Swinnen SP, Wenderoth N	October 2014	Not Determined
23774715	Create Study	The autism brain imaging data exchange: towards a large-scale evaluation of the intrinsic brain architecture in autism.	Molecular psychiatry	Di Martino, A; Yan, C-G; Li, Q; Denio, E; Castellanos, F X; Alaerts, K; Anderson, J S; Assaf, M; Bookheimer, S Y; Dapretto, M; Deen, B; Delmonte, S; Dinstein, I; Ertl-Wagner, B; Fair, D A; Gallagher, L; Kennedy, D P; Keown, C L; Keysers, C; Lainhart, J E; Lord, C; Luna, B; Menon, V; Minshew, N J; Monk, C S; Mueller, S; Müller, R-A; Nebel, M B; Nigg, J T; O'Hearn, K; Pelphrey, K A; Peltier, S J; Rudie, J D; Sunaert, S; Thioux, M; Tyszka, J M; Uddin, L Q; Verhoeven, J S; Wenderoth, N; Wiggins, J L; Mostofsky, S H; Milham, M P	June 2014	Not Determined
23722212	Create Study	Imaging human connectomes at the macroscale.	Nature methods	Craddock, R Cameron; Jbabdi, Saad; Yan, Chao-Gan; Vogelstein, Joshua T; Castellanos, F Xavier; Di Martino, Adriana; Kelly, Clare; Heberlein, Keith; Colcombe, Stan; Milham, Michael P	June 2013	Not Determined
23716135	Create Study	Response time intra-subject variability: commonalities between children with autism spectrum disorders and children with ADHD.	European child & adolescent psychiatry	Adamo N, Huo L, Adelsberg S, Petkova E, Castellanos FX, Di Martino A	February 2014	Not Determined
23631991	Create Study	Clinical applications of the functional connectome.	NeuroImage	Castellanos, F Xavier; Di Martino, Adriana; Craddock, R Cameron; Mehta, Ashesh D; Milham, Michael P	October 15, 2013	Not Determined
23631983	Create Study	Standardizing the intrinsic brain: towards robust measurement of inter-individual variation in 1000 functional connectomes.	NeuroImage	Yan CG, Craddock RC, Zuo XN, Zang YF, Milham MP	October 15, 2013	Not Determined
23541632	Create Study	Shared and distinct intrinsic functional network centrality in autism and attention-deficit/hyperactivity disorder.	Biological psychiatry	Di Martino, Adriana; Zuo, Xi-Nian; Kelly, Clare; Grzadzinski, Rebecca; Mennes, Maarten; Schvarcz, Ariel; Rodman, Jennifer; Lord, Catherine; Castellanos, F Xavier; Milham, Michael P	October 2013	Not Determined
23499792	Create Study	A comprehensive assessment of regional variation in the impact of head micromovements on functional connectomics.	NeuroImage	Yan, Chao-Gan; Cheung, Brian; Kelly, Clare; Colcombe, Stan; Craddock, R Cameron; Di Martino, Adriana; Li, Qingyang; Zuo, Xi-Nian; Castellanos, F Xavier; Milham, Michael P	August 2013	Not Determined
23408984	Create Study	Cortical signatures of dyslexia and remediation: an intrinsic functional connectivity approach.	PloS one	Koyama, Maki S; Di Martino, Adriana; Kelly, Clare; Jutagir, Devika R; Sunshine, Jessica; Schwartz, Susan J; Castellanos, Francisco X; Milham, Michael P	January 1, 2013	Not Determined
23390412	Create Study	Making data sharing count: a publication-based solution.	Frontiers in neuroscience	Gorgolewski, Krzysztof J; Margulies, Daniel S; Milham, Michael P	January 1, 2013	Not Determined
23382713	Create Study	Distinct neural signatures detected for ADHD subtypes after controlling for micro-movements in resting state functional connectivity MRI data.	Frontiers in systems neuroscience	Fair, Damien A; Nigg, Joel T; Iyer, Swathi; Bathula, Deepti; Mills, Kathryn L; Dosenbach, Nico U F; Schlaggar, Bradley L; Mennes, Maarten; Gutman, David; Bangaru, Saroja; Buitelaar, Jan K; Dickstein, Daniel P; Di Martino, Adriana; Kennedy, David N; Kelly, Clare; Luna, Beatriz; Schweitzer, Julie B; Velanova, Katerina; Wang, Yu-Feng; Mostofsky, Stewart; Castellanos, F Xavier; Milham, Michael P	January 1, 2012	Not Determined
23123682	Create Study	Making data sharing work: the FCP/INDI experience.	NeuroImage	Mennes, Maarten; Biswal, Bharat B; Castellanos, F Xavier; Milham, Michael P	November 15, 2013	Not Determined
22508759	Create Study	Increased response-time variability across different cognitive tasks in children with ADHD.	Journal of attention disorders	Adamo N, Di Martino A, Esu L, Petkova E, Johnson K, Kelly S, Castellanos FX, Zuddas A	July 2014	Not Determined
22470352	Create Study	Resting state functional connectivity correlates of inhibitory control in children with attention-deficit/hyperactivity disorder.	Frontiers in psychiatry	Mennes, Maarten; Vega Potler, Natan; Kelly, Clare; Di Martino, Adriana; Castellanos, F Xavier; Milham, Michael P	January 1, 2011	Not Determined
22440648	Create Study	A convergent functional architecture of the insula emerges across imaging modalities.	NeuroImage	Kelly C, Toro R, Di Martino A, Cox CL, Bellec P, Castellanos FX, Milham MP	July 2012	Not Determined
21974788	Create Study	Dimensional brain-behavior relationships in children with attention-deficit/hyperactivity disorder.	Biological psychiatry	Chabernaud C, Mennes M, Kelly C, Nooner K, Di Martino A, Castellanos FX, Milham MP	March 2012	Not Determined
21896497	Create Study	The balance between feeling and knowing: affective and cognitive empathy are reflected in the brain's intrinsic functional dynamics.	Social cognitive and affective neuroscience	Cox CL, Uddin LQ, Di Martino A, Castellanos FX, Milham MP, Kelly C	August 2012	Not Determined
21653865	Create Study	Resting-state functional connectivity indexes reading competence in children and adults.	The Journal of neuroscience : the official journal of the Society for Neuroscience	Koyama MS, Di Martino A, Zuo XN, Kelly C, Mennes M, Jutagir DR, Castellanos FX, Milham MP	June 2011	Not Determined
21296165	Create Study	Extracting information from functional connectivity maps via function-on-scalar regression.	NeuroImage	Reiss PT, Mennes M, Petkova E, Huang L, Hoptman MJ, Biswal BB, Colcombe SJ, Zuo XN, Milham MP	May 2011	Not Determined
21195388	Create Study	Aberrant striatal functional connectivity in children with autism.	Biological psychiatry	Di Martino A, Kelly C, Grzadzinski R, Zuo XN, Mennes M, Mairena MA, Lord C, Castellanos FX, Milham MP	May 2011	Not Determined
21108041	Create Study	Examining autistic traits in children with ADHD: does the autism spectrum extend to ADHD?	Journal of autism and developmental disorders	Grzadzinski R, Di Martino A, Brady E, Mairena MA, O'Neale M, Petkova E, Lord C, Castellanos FX	September 2011	Not Determined
20974260	Create Study	Linking inter-individual differences in neural activation and behavior to intrinsic brain dynamics.	NeuroImage	Mennes M, Zuo XN, Kelly C, Di Martino A, Zang YF, Biswal B, Castellanos FX, Milham MP	February 2011	Not Determined

helpcenter.collection.publications-tab

Collection - Publications

The number of Publications is displayed in parentheses next to the tab name. Clicking on any of the Publication Titles will open the Publication in a new internet browsing tab.

Collection Owners, Program Officers, and users with Submission or Administrative Privileges for the Collection may mark a publication as either Relevant or Not Relevant in the Status column.

Frequently Asked Questions

How can I determine if a publication is relevant?

Publications are considered relevant to a collection when the data shared is directly related to the project or collection.
Where does the NDA get the publications?

PubMed, an online library containing journals, articles, and medical research. Sponsored by NiH and National Library of Medicine (NLM).

Glossary

Create Study

A link to the Create an NDA Study page that can be clicked to start creating an NDA Study with information such as the title, journal and authors automatically populated.
Not Determined Publication

Indicates that the publication has not yet been reviewed and/or marked as Relevant or Not Relevant so it has not been determined whether an NDA Study is expected.
Not Relevant Publication

A publication that is not based on data related to the aims of the grant/project associated with the Collection or not based on any data such as a review article and, therefore, an NDA Study is not expected to be created.
PubMed

PubMed provides citation information for biomedical and life sciences publications and is managed by the U.S. National Institutes of Health's National Library of Medicine.
PubMed ID

The PUBMed ID is the unique ID number for the publication as recorded in the PubMed database.
Relevant Publication

A publication that is based on data related to the aims of the grant/project associated with the Collection and, therefore, an NDA Study is expected to be created.

Contact NDA Help Desk

Data Expected List: Mandatory Data Structures

These data structures are mandatory for your NDA Collection. Please update the Targeted Enrollment number to accurately represent the number of subjects you expect to submit for the entire study.

For NIMH HIV-related research that involves human research participants: Select the dictionary or dictionaries most appropriate for your research. If your research does not require all three data dictionaries, just ignore the ones you do not need. There is no need to delete extra data dictionaries from your NDA Collection. You can adjust the Targeted Enrollment column in the Data Expected tab to “0” for those unnecessary data dictionaries. At least one of the three data dictionaries must have a non-zero value.

Data Expected	Targeted Enrollment	Initial Submission	Subjects Submitted	Initial Share	Subjects Shared	Status
Research Subject and Pedigree	134	01/14/2015	0	05/15/2015	0	Approved

To create your project's Data Expected list, use the "+New Data Expected" to add or request existing structures and to request new Data Structures that are not in the NDA Data Dictionary.

If the Structure you need already exists, locate it and specify your dates and enrollment when adding it to your Data Expected list. If you require changes to the Structure you need, select the indicator stating "No, it requires changes to meet research needs," and upload a file containing your requested changes.

If the structure you need is not yet defined in the Data Dictionary, you can select "Upload Definition" and attach the necessary materials to request its creation.

When selecting the expected dates for your data, make sure to follow the standard Data Sharing Regimen and choose dates within the date ranges that correspond to your project start and end dates.

Please visit the Completing Your Data Expected Tutorial for more information.

Data Expected List: Data Structures per Research Aims

These data structures are specific to your research aims and should list all data structures in which data will be collected and submitted for this NDA Collection. Please update the Targeted Enrollment number to accurately represent the number of subjects you expect to submit for the entire study.

Data Expected	Targeted Enrollment	Initial Submission	Subjects Submitted	Initial Share	Subjects Shared	Status
Ravens Coloured Progressive Matrices (CPM)	134	01/14/2015	134	05/15/2015	134	Approved
ADOS	499	01/14/2015	499	05/15/2015	499	Approved
ADI-R	379	01/14/2015	379	05/15/2015	379	Approved
Social Responsiveness Scale (SRS)	230	01/14/2015	230	05/15/2015	230	Approved
Wechsler Abbreviated Scale of Intelligence (WASI)	554	05/13/2015	554	05/13/2015	554	Approved
Autistic Spectrum Quotient	56	01/14/2015	56	05/15/2015	56	Approved
Social Communication Questionnaire (SCQ)	124	01/14/2015	124	05/15/2015	124	Approved
Evaluated Data	379	01/15/2015	0	05/15/2015	0	Approved
Wechsler Intelligence Scale for Children	49	01/14/2015	49	05/15/2015	49	Approved
Wechsler Adult Intelligence Scale	66	01/14/2015	66	05/15/2015	66	Approved
Physical Exam	370	01/14/2015	370	05/15/2015	370	Approved
Vineland (Parent and Caregiver)	112	01/14/2015	112	05/15/2015	112	Approved

Structure not yet defined

No Status history for this Data Expected has been recorded yet

helpcenter.collection.data-expected-tab

Collection - Data Expected

The Data Expected tab displays the list of all data that NDA expects to receive in association with the Collection as defined by the contributing researcher, as well as the dates for the expected initial upload of the data, and when it is first expected to be shared, or with the research community. Above the primary table of Data Expected, any publications determined to be relevant to the data within the Collection are also displayed - members of the contributing research group can use these to define NDA Studies, connecting those papers to underlying data in NDA.

The tab is used both as a reference for those accessing shared data, providing information on what is expected and when it will be shared, and as the primary tracking mechanism for contributing projects. It is used by both contributing primary researchers, secondary researchers, and NIH Program and Grants Management staff.

Researchers who are starting their project need to update their Data Expected list to include all the Data Structures they are collecting under their grant and set their initial submission and sharing schedule according to the NDA Data Sharing Regimen.

To add existing Data Structures from the Data Dictionary, to request new Data Structure that are not in the Dictionary, or to request changes to existing Data Structures, click "+New Data Expected".

For step-by-step instructions on how to add existing Data Structures, request changes to an existing Structure, or request a new Data Structure, please visit the Completing Your Data Expected Tutorial.

If you are a contributing researcher creating this list for the first time, or making changes to the list as your project progress, please note the following:

Although items you add to the list and changes you make are displayed, they are not committed to the system until you Save the entire page using the "Save" button at the bottom of your screen. Please Save after every change to ensure none of your work is lost.
If you attempt to add a new structure, the title you provide must be unique - if another structure exists with the same name your change will fail.
Adding a new structure to this list is the only way to request the creation of a new Data Dictionary definition.

Frequently Asked Questions

What is an NDA Data Structure?

An NDA Data Structure is comprised of multiple Data Elements to make up an electronic definition of an assessment, measure, questionnaire, etc will have a corresponding Data Structure.
What is the NDA Data Dictionary?

The NDA Data Dictionary is comprised of electronic definitions known as Data Structures.

Glossary

Analyzed Data

Data specific to the primary aims of the research being conducted (e.g. outcome measures, other dependent variables, observations, laboratory results, analyzed images, volumetric data, etc.) including processed images.
Data Item

Items listed on the Data Expected list in the Collection which may be an individual and discrete Data Structure, Data Structure Category, or Data Structure Group.
Data Structure

A defined organization and group of Data Elements to represent an electronic definition of a measure, assessment, questionnaire, or collection of data points. Data structures that have been defined in the NDA Data Dictionary are available at https://nda.nih.gov/general-query.html?q=query=data-structure
Data Structure Category

An NDA term describing the affiliation of a Data Structure to a Category, which may be disease/disorder or diagnosis related (Depression, ADHD, Psychosis), specific to data type (MRI, eye tracking, omics), or type of data (physical exam, IQ).
Data Structure Group

A Data Item listed on the Data Expected tab of a Collection that indicates a group of Data Structures (e.g., ADOS or SCID) for which data may be submitted instead of a specific Data Structure identified by version, module, edition, etc. For example, the ADOS Data Structure Category includes every ADOS Data Structure such as ADOS Module 1, ADOS Module 2, ADOS Module 1 - 2nd Edition, etc. The SCID Data Structure Group includes every SCID Data Structure such as SCID Mania, SCID V Mania, SCID PTSD, SCID-V Diagnosis, and more.
Evaluated Data

A new Data Structure category, Evaluated Data is analyzed data resulting from the use of computational pipelines in the Cloud and can be uploaded directly back to a miNDAR database. Evaluated Data is expected to be listed as a Data Item in the Collection's Data Expected Tab.
Imaging Data

Imaging+ is an NDA term which encompasses all imaging related data including, but not limited to, images (DTI, MRI, PET, Structural, Spectroscopy, etc.) as well as neurosignal data (EEG, fMRI, MEG, EGG, eye tracking, etc.) and Evaluated Data.
Initial Share Date

Initial Submission and Initial Share dates should be populated according to the NDA Data Sharing Terms and Conditions. Any modifications to these will go through the approval processes outlined above. Data will be shared with authorized users upon publication (via an NDA Study) or 1-2 years after the grant end date specified on the first Notice of Award, as defined in the applicable Data Sharing Terms and Conditions.
Initial Submission Date

Initial Submission and Initial Share dates should be populated according to these NDA Data Sharing Terms and Conditions. Any modifications to these will go through the approval processes outlined above. Data for all subjects is not expected on the Initial Submission Date and modifications may be made as necessary based on the project's conduct.
Research Subject and Pedigree

An NDA created Data Structure used to convey basic information about the subject such as demographics, pedigree (links family GUIDs), diagnosis/phenotype, and sample location that are critical to allow for easier querying of shared data.
Submission Cycle

The NDA has two Submission Cycles per year - January 15 and July 15.
Submission Exemption

An interface to notify NDA that data may not be submitted during the upcoming/current submission cycle.

Contact NDA Help Desk

Collection Owners and those with Collection Administrator permission, may edit a collection. The following is currently available for Edit on this page:

Associated Studies

Studies that have been defined using data from a Collection are important criteria to determine the value of data shared. The number of subjects column displays the counts from this Collection that are included in a Study, out of the total number of subjects in that study. The Data Use column represents whether or not the study is a primary analysis of the data or a secondary analysis. State indicates whether the study is private or shared with the research community.

Study NameFilter by Study Name	AbstractFilter by Abstract	Collection/Study SubjectsFilter by Collection/Study Subjects	Data UsageFilter by Data Usage	StateFilter by State
Charting brain growth and aging at high spatial precision.	Defining reference models for population variation, and the ability to study individual deviations is essential for understanding inter-individual variability and its relation to the onset and progression of medical conditions. In this work, we assembled a reference cohort of neuroimaging data from 82 sites (N=58,836; ages 2–100) and used normative modeling to characterize lifespan trajectories of cortical thickness and subcortical volume. Models are validated against a manually quality checked subset (N=24,354) and we provide an interface for transferring to new data sources. We showcase the clinical value by applying the models to a transdiagnostic psychiatric sample (N=1985), showing they can be used to quantify variability underlying multiple disorders whilst also refining case-control inferences. These models will be augmented with additional samples and imaging modalities as they become available. This provides a common reference platform to bind results from different studies and ultimately paves the way for personalized clinical decision-making.	1083/7714	Secondary Analysis	Shared
Evidence for embracing normative modeling	In this work, we expand the normative model repository introduced in Rutherford et al., 2022a to include normative models charting lifespan trajectories of structural surface area and brain functional connectivity, measured using two unique resting-state network atlases (Yeo-17 and Smith-10), and an updated online platform for transferring these models to new data sources. We showcase the value of these models with a head-to-head comparison between the features output by normative modeling and raw data features in several benchmarking tasks: mass univariate group difference testing (schizophrenia versus control), classification (schizophrenia versus control), and regression (predicting general cognitive ability). Across all benchmarks, we show the advantage of using normative modeling features, with the strongest statistically significant results demonstrated in the group difference testing and classification tasks. We intend for these accessible resources to facilitate the wider adoption of normative modeling across the neuroimaging community.	1083/2599	Secondary Analysis	Shared
Derivation of Brain Structure Volumes from MRI Neuroimages hosted by NDAR using C-PAC pipeline and ANTs	An automated pipeline was developed to reference Neuroimages hosted by the National Database for Autism Research (NDAR) and derive volumes for distinct brain structures using Advanced Normalization Tools (ANTs) and the Configurable-Pipeline for the Analysis of Connectomes (C-PAC) platform. This pipeline utilized the ANTs cortical thickness methodology discuessed in "Large-Scale Evaluation of ANTs and Freesurfer Cortical Tchickness Measurements" [http://www.ncbi.nlm.nih.gov/pubmed/24879923] to extract a cortical thickness volume from T1-weighted anatomical MRI data gathered from the NDAR database. This volume was then registered to an stereotaxic-space anatomical template (OASIS-30 Atropos Template) which was acquired from the Mindboggle Project webpage [http://mindboggle.info/data.html]. After registration, the mean cortical thickness was calculated at 31 ROIs on each hemisphere of the cortex and using the Desikan-Killiany-Tourville (DKT-31) cortical labelling protocol [http://mindboggle.info/faq/labels.html] over the OASIS-30 template. NOTE: This study is ongoing; additional data my be available in the future. As a result, each subject that was processed has a cortical thickness volume image and a text file with the mean thickness ROIs (in mm) stored in Amazon Web Services (AWS) Simple Storage Service (S3). Additionally, these results were tabulated in an AWS-hosted database (through NDAR) to enable simple, efficient querying and data access. All of the code used to perform this analysis is publicly available on Github [https://github.com/FCP-INDI/ndar-dev]. Additionally, as a computing platform, we developed an Amazon Machine Image (AMI) that comes fully equipped to run this pipeline on any dataset. Using AWS Elastic Cloud Computing (EC2), users can launch our publicly available AMI ("C-PAC with benchmark", AMI ID: "ami-fee34296", N. Virginia region) and run the ANTs cortical thickness pipeline. The AMI is fully compatible with Sun Grid Engine as well; this enables users to perform many pipeline runs in parallel over a cluster-computing framework.	1011/1428	Secondary Analysis	Shared

* Data not on individual level

helpcenter.collection.associated-studies-tab

Collection - Associated Studies

Clicking on the Study Title will open the study details in a new internet browser tab. The Abstract is available for viewing, providing the background explanation of the study, as provided by the Collection Owner.

Primary v. Secondary Analysis: The Data Usage column will have one of these two choices. An associated study that is listed as being used for Primary Analysis indicates at least some and potentially all of the data used was originally collected by the creator of the NDA Study. Secondary Analysis indicates the Study owner was not involved in the collection of data, and may be used as supporting data.

Private v. Shared State: Studies that remain private indicate the associated study is only available to users who are able to access the collection. A shared study is accessible to the general public.

Frequently Asked Questions

How do I associate a study to my collection?

Studies are associated to the Collection automatically when the data is defined in the Study.

Glossary

Associated Studies Tab

A tab in a Collection that lists the NDA Studies that have been created using data from that Collection including both Primary and Secondary Analysis NDA Studies.

Contact NDA Help Desk

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