NIMH Data Archive - General Query

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NDA Help Center
Filter Cart
Viewable at the top right of NDA pages, the Filter Cart is a temporary holder for filters and data they select. Filters are added to the Workspace first, before being submitted to The Filter Cart. Data selected by filters in the Filter Cart can be added to a Data Package or an NDA Study from the Data Packaging Page, by clicking the 'Create Data Package / Add Data to Study' button.

The filter cart supports combining multiple filters together, and depending on filter type will use "AND" or "OR" when combining filters.

Multiple selections from the same filter type will result in those selections being applied with an ‘OR’ condition. For example, if you add an NDA Collection Filter with selections for both collections 2112 and 2563 to an empty Workspace, the subjects from NDA Collection 2112 ‘OR’ NDA Collection 2563 will be added to your Workspace even if a subject is in both NDA Collections. You can then add other NDA Collections to your Workspace which further extends the ‘OR’ condition.

If a different filter type is added to your Workspace, or a filter has already been submitted to the Filter Cart, the operation then performs a logical ‘AND’ operation. This means that given the subjects returned from the first filter, only those subjects that matched the first filter are returned by the second filter (i.e., subjects that satisfied both filters).

When combining other filters with the GUID filter, please note the GUID filter should be added last. Otherwise, preselected data may be lost. For example, a predefined filter from Featured Datasets may select a subset of data available for a subject. When combined with a GUID filter for the same subject, the filter cart will contain all data available from that subject, data structure, and dataset; this may be more data than was selected in the predefined filter for that subject. Again, you should add the GUID Filter as the last filter to your cart. This ensures 'AND' logic between filters and will limit results to the subjects, data structures, and datasets already included in your filter cart.

Note that only the subjects specific to your filter will be added to your Filter Cart and only on data shared with the research community. Other data for those same subjects may exist (i.e., within another NDA Collection, associated with a data structure that was not requested in the query, etc.). So, users should select ‘Find all Subjects Data’ to identify all data for those specific subjects.

Additional Tips:

You may query the data without an account, but to gain access you will need to create an NDA user account and apply for access. Most data access requires that you or your lab are sponsored by an NIH recognized institution with Federal Wide Assurance (FWA). Without access, you will not be able to obtain individual-level data.

Once you have selected data of interest you can:

Create a data package - This allows you to specify format for access/download

Assign to Study Cohort - Associate the data to an NDA Study allowing for a DOI to be generated and the data to be linked directly to a finding, publication, or data release.

Find All Subject Data - Depending on filter types being used, not all data associated with a subject will be selected. Data may be restricted by data structure, NDA Collection, or outcome variables (e.g., NDA Study). ‘Find All Data’ expands the filter criteria by replacing all filters in your Filter Cart with a single Query by GUID filter for all subjects selected by those filters.

Please Note:

When running a query, it may take a moment to populate the Filter Cart. Queries happen in the background so you can define other queries during this time.

When you add your first filter, all data associated with your query will be added to the Filter Cart (e.g., a Concept, an NDA Collection, a Data Structure/Element, etc.). As you add additional filters, they will also display in the Filter Cart. Only the name of filter will be shown in the Filter Cart, not the underlying structures.

Information about the contents of the Filter Cart can be seen by clicking "Edit”.

Once your results appear in the Filter Cart, you can create a data package or assign subjects to a study by selecting the 'Package/Assign to Study' option. You can also 'Edit' or 'Clear' filters.
Frequently Asked Questions

What is a Filter Cart?

Viewable at the top right of NDA pages, the Filter Cart is a temporary holder of data identified by the user, through querying or browsing, as being of some potential interest. The Filter Cart is where you send the data from your Workspace after it has been filtered.

What do I do after filters are added to the Filter Cart?

After filters are added to the Filter Cart, users have options to ‘Create a Package’ for download, ‘Associate to Study Cohort’, or ‘Find All Subject Data’. Selecting ‘Find All Subject Data’ identifies and pulls all data for the subjects into the Filter Cart. Choosing ‘Create a Package’ allows users to package and name their query information for download. Choosing ‘Associate to Study Cohort’ gives users the opportunity to choose the Study Cohort they wish to associate this data.

Are there limitations on the amount of data a user can download?

NDA limits the rate at which individual users can transfer data out of Amazon Web Services (AWS) S3 Object storage to non-AWS internet addresses. All users have a download limit of 20 Terabytes. This limit applies to the volume of data an individual user can transfer within a 30-day window. Only downloads to non-AWS internet addresses will be counted against the limit.

How does Filter Cart Boolean logic work?

The Filter Cart currently employs basic AND/OR Boolean logic. A single filter may contain multiple selections for that filter type, e.g., a single NDA Study filter might contain NDA Study 1 and NDA Study 2. A subject that is in EITHER 1 OR 2 will be returned. Adding multiple filters to the cart, regardless of type, will AND the result of each filter. If NDA Study 1 and NDA Study 2 are added as individual filters, data for a subject will only be selected if the subject is included in BOTH 1 AND 2.

When combining other filters with the GUID filter, please note the GUID filter should be added last. Otherwise, preselected data may be lost. For example, a predefined filter from Featured Datasets may select a subset of data available for a subject. When combined with a GUID filter for the same subject, the filter cart will contain all data available from that subject, data structure, and dataset; this may be more data than was selected in the predefined filter for that subject. Again, you should add the GUID Filter as the last filter to your cart. This ensures 'AND' logic between filters and will limit results to the subjects, data structures, and datasets already included in your filter cart.
Glossary

Workspace

The Workspace within the General Query Tool is a holding area where you can review your pending filters prior to adding them to Filter Cart. Therefore, the first step in accessing data is to select one or more items and move it into the Workspace.

Filter Cart

Viewable at the top right of NDA pages, the Filter Cart is a temporary holder of data identified by the user through querying or browsing as being of some potential interest. The Filter Cart adds data using an AND condition. The opportunity to further refine data to determine what will be downloaded or sent to a miNDAR is available on the Data Packaging Page, the next step after the Filter Cart. Subsequent access to data is restricted by User Permission or Privilege; however Filter Cart use is not.
Contact NDA Help Desk

Derived fields provide general availability of data in NDA and should be used for that purpose only. For information on how these variables were derived please see our Methods.

If you would like other derived fields made available for query, please contact us at The NDA Help Desk.

Use "Select Data" below to query the data available in NDA. Then, select download to create a package and download your results. Use the Data tab above to search in other ways. For more information on search see our Methods.

No results to display Results per Page:

No Results for Selected Options

Query using the interface below allows you to identify subjects based upon omic alterations (see help icon for instruction). Currently, only a few projects have provided analyzed data.

No Alterations for Selected Options

For projects that share genomic or proteomic results, published and provided alterations are available for query using NDA's omicSEARCH. To use this feature, search by alteration type (e.g., SNP, CNV, SNV), affected region, chromosome, cytoband, etc., returning specific alterations. The details column will specify possible values for a given alteration (e.g., possible alleles for a given SNP). Selected alterations can then be applied -- via Show Results -- against participant data, including phenotypic categories and imaging results in NDA. Authenticated users will be able to search by significance values and download participant data.

How to use this dialog

Enter your search criteria in the input fields. Most fields will take a comma-separated list of values. Values separated by a comma will have "OR" logic applied to them, and "AND" logic will be applied between fields. For example, "Chromosome: 1, 2" with "Address: 95100795, 10320083" would return results located on either chromosome at the specified positions. The address field for CNVs is in the form of "start:stop" position (Note: this is not a range search and will only return an alteration with the exact start and stop position). The system will suggest values as you type. To see all available values before typing, press the up or down arrow key. You may navigate through the suggestion list with the mouse or keyboard.
Once you have entered all values you wish to search by, click the "Show Results" button on the bottom of the dialog. This will populate the table with all alterations that match your criteria. You can use the table navigation controls to select how many alterations to see at a time and to navigate forward, back, or to a specific page of alterations.
Check the "Select" box next to all alterations you would like to see subjects for, then click the "Apply" button at the bottom of the dialog. The dialog will close and the main page will display the subjects that match your selected alterations, including selection criteria for phenotype, imaging, and basic demographics.

Data Distribution by Gender¹	Phenotypic Data Distribution¹	Neuroimaging Data Distribution	Genomic Data Distribution
¹ Numbers reported are subjects by age

DATA SOURCE	Value:
SUBJECT ID
INTERVIEW AGE	Range:	To:
GENDER	Value:
GESTATIONAL AGE	Range:	To:
REGRESSION_AGE	Range:	To:
AGE ONSET	Range:	To:

NDAR CATEGORY	Value:
CLINICAL DIAGNOSIS	Value:
ADI SCORE	Value:
ADOS CLINICAL DIAGNOSIS	Value:
ADOS SCORE	Value:
VERBAL IQ	Value:
NON VERBAL IQ	Value:
ADI CLINICAL DIAGNOSIS	Value:
SUBTYPE MIN VERBAL	Value:
SUBTYPE SEIZURE	Value:
VINELAND SCORE	Value:
ADI SOCIAL INTERACTION	Range:	To:
ADI COMMUNICATION NON-VERBAL	Range:	To:
ADI COMMUNICATION VERBAL	Range:	To:
ADI BEHAVIOR	Range:	To:
ADOS COMMUNICATION	Range:	To:
ADOS COMMUNICATION AND SOCIAL INTERACTION	Range:	To:
ADOS SOCIAL INTERACTION	Range:	To:
NON-VERBAL IQ SCORE	Range:	To:
VERBAL IQ SCORE	Range:	To:

SPECTROSCOPY
MRI
	IMAGE PULSE SEQ T1W
	IMAGE PULSE SEQ T2W
	IMAGE PULSE SEQ FSPGR
	IMAGE PULSE SEQ MPRAGE
DTI
fMRI
	IMAGE PULSE SEQ EPI
	IMAGE PULSE RESTING STATE
EEG
PET
EYE TRACKING
MEG
DIMENSION		Value:
SCANNER MANUFACTURER		Value:
FLIP ANGLE		Value:
TR		Value:
TE		Value:

	OMICS MOLECULE		Value:
	APPLICATION/TECHNOLOGY		Value:
	OMICS PLATFORM		Value:

ALL
"Personal Tracking Device" permission group
22q11.2
AGRE General Access Permission Group
AMP-SCZ Collaboration Space Permission Group
AMP-SCZ Personal Tracking Device Data Collaboration Space Permission Group
ARRA Autism Sequencing Consortium
ATP Clinical Assessments
ATP Imaging and Omics
Adolescent Brain Cognitive Development
Autism Genetic Research Exchange
Autism Genome Project
BRAIN/NeMO: A multimodal atlas of human brain cell types: Patch-Seq
BRAIN/NeMO: A single-cell genomic atlas for maturation of the human cerebellum during early childhood
BRAIN/NeMO: Cell type-specific 3D epigenomes in the developing human cortex
BRAIN/NeMO: A Cellular Resolution Census of the Developing Human Brain
BRAIN/NeMO: A Multimodal atlas of human brain cell types: Human variation RNAseq & WGS (Lein)
BRAIN/NeMO: A Multimodal atlas of human brain cell types: Human variation RNAseq & WGS, Limited to Brain Health & Disease (Lein)
BRAIN/NeMO: A multimodal atlas of human brain cell types: Human Cortex RNASeq
BRAIN/NeMO: A multimodal atlas of human brain cell types: Middle Temporal Gyrus & Human Cortex RNASeq
BRAIN/NeMO: Single Cell ATACseq of the Developing Human Brain (Nowakowski)
BRAIN/NeMO: Single-cell analysis of prenatal and postnatal human cortical development
Computational Credits
DS-Epilepsy-PUB-COL-NPU
Developing Human Connectome Project (dHCP)
NDA-DS (Psychiatric Disorders)-MDS
NDA-DS(Emotional Disorders & weight gain)-PUB-COL-MDS
NDA-DS(Mental Health)-MDS
NDA-DS(Mental Health)-PUB-COL-MDS
NDA-DS(PTSD and other related mental health disorders)
NDA-DS(Psychosis spectrum disorders)
NDA-DS(Schizophrenia)
NDA-DS-Autism
NDA-DS-Neurological Disorders
NDA-DS-Psychosis spectrum disorders-GSO
NDA-DS-Tourette-IRB
NDA-GRU
NDA-GRU-IRB-NPU
NDA-GRU-IRB-PUB
NDA-HMB
NDA-HMB-IRB
NDA-HMB-IRB-PUB-MDS
NDA-HMB-MDS
NDA-HMB-NPU
NDA-HMB-PUB-COL-MDS
NDA-IRB
NDA-IRB-NPU
NDA-Other-(Research in Adults 18 and older)-NPU-MDS
NIMH Data Archive
NINDS Triplet Repeat Diseases Repository
NINDS-DS-Neurodegenerative Disorders
Osteoarthritis Initiative

New Password:
Repeat New Password:

ALTERATION:
ALTERATION TYPE:
DETAILS:
CHROMOSOME:

CYTOBAND:
ADDRESS:
AFFECTED REGION:
REGION TYPE:

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